Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1560 and HP15_1561 overlap by 4 nucleotides HP15_1561 and HP15_1562 are separated by 161 nucleotides HP15_1562 and HP15_1563 are separated by 11 nucleotides HP15_1563 and HP15_1564 overlap by 8 nucleotides
HP15_1560: HP15_1560 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein, at 1,640,358 to 1,642,691
_1560
HP15_1561: HP15_1561 - (2Fe-2S)-binding domain protein, at 1,642,688 to 1,643,149
_1561
HP15_1562: HP15_1562 - conserved hypothetical protein, at 1,643,311 to 1,643,715
_1562
HP15_1563: HP15_1563 - branched-chain amino acid transport, at 1,643,727 to 1,644,056
_1563
HP15_1564: HP15_1564 - AzlC-like protein, at 1,644,049 to 1,644,753
_1564
Position (kb)
1643
1644 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1642.366 kb on + strand, within HP15_1560 at 1642.366 kb on + strand, within HP15_1560 at 1642.375 kb on + strand, within HP15_1560 at 1642.376 kb on + strand, within HP15_1560 at 1642.381 kb on + strand, within HP15_1560 at 1642.381 kb on + strand, within HP15_1560 at 1642.389 kb on - strand, within HP15_1560 at 1642.389 kb on - strand, within HP15_1560 at 1642.389 kb on - strand, within HP15_1560 at 1642.396 kb on - strand, within HP15_1560 at 1642.565 kb on - strand at 1642.608 kb on + strand at 1642.608 kb on + strand at 1642.825 kb on - strand, within HP15_1561 at 1642.848 kb on + strand at 1642.848 kb on + strand, within HP15_1561 at 1642.884 kb on + strand, within HP15_1561 at 1642.892 kb on + strand, within HP15_1561 at 1643.010 kb on - strand, within HP15_1561 at 1643.087 kb on - strand, within HP15_1561 at 1643.258 kb on + strand at 1643.258 kb on + strand at 1643.263 kb on + strand at 1643.266 kb on - strand at 1643.268 kb on + strand at 1643.281 kb on - strand at 1643.318 kb on - strand at 1643.338 kb on - strand at 1643.458 kb on + strand, within HP15_1562 at 1643.474 kb on - strand, within HP15_1562 at 1643.515 kb on - strand, within HP15_1562 at 1643.534 kb on + strand, within HP15_1562 at 1643.560 kb on + strand, within HP15_1562 at 1643.773 kb on + strand, within HP15_1563 at 1643.784 kb on - strand, within HP15_1563 at 1644.116 kb on + strand at 1644.116 kb on + strand at 1644.351 kb on + strand, within HP15_1564 at 1644.351 kb on + strand, within HP15_1564 at 1644.426 kb on + strand, within HP15_1564 at 1644.482 kb on + strand, within HP15_1564 at 1644.482 kb on + strand, within HP15_1564 at 1644.482 kb on + strand, within HP15_1564 at 1644.490 kb on - strand, within HP15_1564 at 1644.668 kb on + strand, within HP15_1564 at 1644.689 kb on - strand at 1644.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,642,366 + HP15_1560 0.86 -0.6 1,642,366 + HP15_1560 0.86 -0.1 1,642,375 + HP15_1560 0.86 +0.6 1,642,376 + HP15_1560 0.86 -1.5 1,642,381 + HP15_1560 0.87 +0.2 1,642,381 + HP15_1560 0.87 -0.2 1,642,389 - HP15_1560 0.87 +0.1 1,642,389 - HP15_1560 0.87 +1.3 1,642,389 - HP15_1560 0.87 +0.1 1,642,396 - HP15_1560 0.87 +0.1 1,642,565 - -2.6 1,642,608 + +0.3 1,642,608 + -0.0 1,642,825 - HP15_1561 0.30 -0.6 1,642,848 + +1.3 1,642,848 + HP15_1561 0.35 -0.3 1,642,884 + HP15_1561 0.42 -0.3 1,642,892 + HP15_1561 0.44 -0.3 1,643,010 - HP15_1561 0.70 +0.1 1,643,087 - HP15_1561 0.86 -1.1 1,643,258 + +0.1 1,643,258 + +1.3 1,643,263 + +0.6 1,643,266 - +0.5 1,643,268 + -1.6 1,643,281 - -0.6 1,643,318 - +0.8 1,643,338 - +0.7 1,643,458 + HP15_1562 0.36 +0.8 1,643,474 - HP15_1562 0.40 +0.5 1,643,515 - HP15_1562 0.50 +0.6 1,643,534 + HP15_1562 0.55 +1.1 1,643,560 + HP15_1562 0.61 +1.8 1,643,773 + HP15_1563 0.14 +1.3 1,643,784 - HP15_1563 0.17 -1.5 1,644,116 + +0.1 1,644,116 + +0.7 1,644,351 + HP15_1564 0.43 +0.5 1,644,351 + HP15_1564 0.43 -0.0 1,644,426 + HP15_1564 0.53 -0.4 1,644,482 + HP15_1564 0.61 +0.6 1,644,482 + HP15_1564 0.61 +0.3 1,644,482 + HP15_1564 0.61 +0.1 1,644,490 - HP15_1564 0.63 +0.0 1,644,668 + HP15_1564 0.88 +0.6 1,644,689 - -0.4 1,644,699 + +1.0
Or see this region's nucleotide sequence