Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1557 and Psest_1558 are separated by 244 nucleotides Psest_1558 and Psest_1559 are separated by 144 nucleotides Psest_1559 and Psest_1560 are separated by 64 nucleotides
Psest_1557: Psest_1557 - Phosphoenolpyruvate carboxylase, at 1,656,713 to 1,659,352
_1557
Psest_1558: Psest_1558 - adenylate kinases, at 1,659,597 to 1,660,244
_1558
Psest_1559: Psest_1559 - universal bacterial protein YeaZ, at 1,660,389 to 1,661,066
_1559
Psest_1560: Psest_1560 - hypothetical protein, at 1,661,131 to 1,661,475
_1560
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-2
-1
0
1 at 1658.612 kb on + strand, within Psest_1557 at 1658.612 kb on + strand, within Psest_1557 at 1658.613 kb on - strand, within Psest_1557 at 1658.753 kb on + strand, within Psest_1557 at 1658.754 kb on - strand, within Psest_1557 at 1659.069 kb on + strand, within Psest_1557 at 1659.070 kb on - strand, within Psest_1557 at 1659.135 kb on + strand at 1659.208 kb on + strand at 1659.208 kb on + strand at 1659.208 kb on + strand at 1659.208 kb on + strand at 1659.208 kb on + strand at 1659.208 kb on + strand at 1659.209 kb on - strand at 1659.209 kb on - strand at 1659.212 kb on + strand at 1659.212 kb on + strand at 1659.212 kb on + strand at 1659.213 kb on - strand at 1659.213 kb on - strand at 1659.213 kb on - strand at 1659.213 kb on - strand at 1659.213 kb on - strand at 1659.341 kb on - strand at 1659.427 kb on + strand at 1659.427 kb on + strand at 1659.428 kb on - strand at 1659.428 kb on - strand at 1659.428 kb on - strand at 1659.576 kb on + strand at 1660.354 kb on - strand at 1660.394 kb on + strand at 1660.394 kb on + strand at 1661.100 kb on - strand at 1661.206 kb on + strand, within Psest_1560 at 1661.206 kb on + strand, within Psest_1560
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 1,658,612 + Psest_1557 0.72 +0.2 1,658,612 + Psest_1557 0.72 -0.8 1,658,613 - Psest_1557 0.72 +0.1 1,658,753 + Psest_1557 0.77 +0.1 1,658,754 - Psest_1557 0.77 -0.1 1,659,069 + Psest_1557 0.89 +0.3 1,659,070 - Psest_1557 0.89 +0.8 1,659,135 + -0.2 1,659,208 + +1.1 1,659,208 + +0.6 1,659,208 + +0.4 1,659,208 + -0.1 1,659,208 + +0.3 1,659,208 + +0.6 1,659,209 - +0.8 1,659,209 - -0.7 1,659,212 + +1.0 1,659,212 + -2.3 1,659,212 + -0.6 1,659,213 - -0.4 1,659,213 - -0.4 1,659,213 - +0.4 1,659,213 - +0.0 1,659,213 - +0.2 1,659,341 - -0.7 1,659,427 + -0.2 1,659,427 + +0.4 1,659,428 - -0.5 1,659,428 - +0.5 1,659,428 - +0.7 1,659,576 + -0.1 1,660,354 - -0.2 1,660,394 + +0.3 1,660,394 + +1.4 1,661,100 - +0.4 1,661,206 + Psest_1560 0.22 +0.5 1,661,206 + Psest_1560 0.22 -0.9
Or see this region's nucleotide sequence