Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1558

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1557 and Psest_1558 are separated by 244 nucleotidesPsest_1558 and Psest_1559 are separated by 144 nucleotidesPsest_1559 and Psest_1560 are separated by 64 nucleotides Psest_1557: Psest_1557 - Phosphoenolpyruvate carboxylase, at 1,656,713 to 1,659,352 _1557 Psest_1558: Psest_1558 - adenylate kinases, at 1,659,597 to 1,660,244 _1558 Psest_1559: Psest_1559 - universal bacterial protein YeaZ, at 1,660,389 to 1,661,066 _1559 Psest_1560: Psest_1560 - hypothetical protein, at 1,661,131 to 1,661,475 _1560 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -2 -1 0 1at 1658.612 kb on + strand, within Psest_1557at 1658.612 kb on + strand, within Psest_1557at 1658.613 kb on - strand, within Psest_1557at 1658.753 kb on + strand, within Psest_1557at 1658.754 kb on - strand, within Psest_1557at 1659.069 kb on + strand, within Psest_1557at 1659.070 kb on - strand, within Psest_1557at 1659.135 kb on + strandat 1659.208 kb on + strandat 1659.208 kb on + strandat 1659.208 kb on + strandat 1659.208 kb on + strandat 1659.208 kb on + strandat 1659.208 kb on + strandat 1659.209 kb on - strandat 1659.209 kb on - strandat 1659.212 kb on + strandat 1659.212 kb on + strandat 1659.212 kb on + strandat 1659.213 kb on - strandat 1659.213 kb on - strandat 1659.213 kb on - strandat 1659.213 kb on - strandat 1659.213 kb on - strandat 1659.341 kb on - strandat 1659.427 kb on + strandat 1659.427 kb on + strandat 1659.428 kb on - strandat 1659.428 kb on - strandat 1659.428 kb on - strandat 1659.576 kb on + strandat 1660.354 kb on - strandat 1660.394 kb on + strandat 1660.394 kb on + strandat 1661.100 kb on - strandat 1661.206 kb on + strand, within Psest_1560at 1661.206 kb on + strand, within Psest_1560

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,658,612 + Psest_1557 0.72 +0.2
1,658,612 + Psest_1557 0.72 -0.8
1,658,613 - Psest_1557 0.72 +0.1
1,658,753 + Psest_1557 0.77 +0.1
1,658,754 - Psest_1557 0.77 -0.1
1,659,069 + Psest_1557 0.89 +0.3
1,659,070 - Psest_1557 0.89 +0.8
1,659,135 + -0.2
1,659,208 + +1.1
1,659,208 + +0.6
1,659,208 + +0.4
1,659,208 + -0.1
1,659,208 + +0.3
1,659,208 + +0.6
1,659,209 - +0.8
1,659,209 - -0.7
1,659,212 + +1.0
1,659,212 + -2.3
1,659,212 + -0.6
1,659,213 - -0.4
1,659,213 - -0.4
1,659,213 - +0.4
1,659,213 - +0.0
1,659,213 - +0.2
1,659,341 - -0.7
1,659,427 + -0.2
1,659,427 + +0.4
1,659,428 - -0.5
1,659,428 - +0.5
1,659,428 - +0.7
1,659,576 + -0.1
1,660,354 - -0.2
1,660,394 + +0.3
1,660,394 + +1.4
1,661,100 - +0.4
1,661,206 + Psest_1560 0.22 +0.5
1,661,206 + Psest_1560 0.22 -0.9

Or see this region's nucleotide sequence