Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1286

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1284 and Psest_1285 are separated by 128 nucleotidesPsest_1285 and Psest_1286 are separated by 126 nucleotidesPsest_1286 and Psest_1287 are separated by 143 nucleotides Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623 _1284 Psest_1285: Psest_1285 - hypothetical protein, at 1,389,752 to 1,390,303 _1285 Psest_1286: Psest_1286 - inosine-5'-monophosphate dehydrogenase, at 1,390,430 to 1,391,899 _1286 Psest_1287: Psest_1287 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 1,392,043 to 1,393,623 _1287 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.636 kb on - strandat 1389.636 kb on - strandat 1389.752 kb on - strandat 1389.760 kb on + strandat 1389.760 kb on + strandat 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strandat 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.006 kb on + strand, within Psest_1285at 1390.007 kb on - strand, within Psest_1285at 1390.335 kb on + strandat 1390.336 kb on - strandat 1390.351 kb on - strandat 1390.351 kb on - strandat 1391.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,389,463 + Psest_1284 0.88 -1.3
1,389,463 + Psest_1284 0.88 +0.3
1,389,463 + Psest_1284 0.88 -0.4
1,389,463 + Psest_1284 0.88 -0.7
1,389,464 - Psest_1284 0.88 +0.4
1,389,464 - Psest_1284 0.88 +0.4
1,389,464 - Psest_1284 0.88 -1.3
1,389,464 - Psest_1284 0.88 +0.0
1,389,464 - Psest_1284 0.88 +0.2
1,389,464 - Psest_1284 0.88 -1.7
1,389,464 - Psest_1284 0.88 +1.4
1,389,636 - +0.0
1,389,636 - +0.6
1,389,752 - +0.3
1,389,760 + -0.1
1,389,760 + +1.0
1,390,004 + Psest_1285 0.46 -1.3
1,390,004 + Psest_1285 0.46 -1.0
1,390,004 + Psest_1285 0.46 -0.2
1,390,004 + Psest_1285 0.46 -0.8
1,390,004 + Psest_1285 0.46 +0.8
1,390,004 + Psest_1285 0.46 +0.0
1,390,004 + Psest_1285 0.46 -0.7
1,390,004 + Psest_1285 0.46 -1.3
1,390,004 + Psest_1285 0.46 -0.5
1,390,004 + Psest_1285 0.46 -0.8
1,390,004 + Psest_1285 0.46 +1.8
1,390,005 - Psest_1285 0.46 -0.7
1,390,005 - Psest_1285 0.46 +0.0
1,390,005 - Psest_1285 0.46 +0.0
1,390,005 - Psest_1285 0.46 -0.6
1,390,005 - Psest_1285 0.46 -2.5
1,390,005 - Psest_1285 0.46 +0.6
1,390,005 - Psest_1285 0.46 +0.0
1,390,005 - Psest_1285 0.46 -0.6
1,390,005 - +0.0
1,390,005 - Psest_1285 0.46 -0.7
1,390,005 - Psest_1285 0.46 -2.2
1,390,006 + Psest_1285 0.46 +0.2
1,390,007 - Psest_1285 0.46 +0.2
1,390,335 + +0.3
1,390,336 - -1.0
1,390,351 - -0.2
1,390,351 - -1.0
1,391,980 + -0.3

Or see this region's nucleotide sequence