Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1109 and Psest_1110 are separated by 0 nucleotides Psest_1110 and Psest_1111 are separated by 3 nucleotides Psest_1111 and Psest_1112 are separated by 197 nucleotides
Psest_1109: Psest_1109 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,203,140 to 1,204,000
_1109
Psest_1110: Psest_1110 - outer membrane lipoprotein LolB, at 1,204,001 to 1,204,621
_1110
Psest_1111: Psest_1111 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,204,625 to 1,206,352
_1111
Psest_1112: Psest_1112 - glutamyl-tRNA reductase, at 1,206,550 to 1,207,818
_1112
Position (kb)
1204
1205
1206
1207 Strain fitness (log2 ratio)
-2
-1
0
1 at 1204.689 kb on - strand at 1204.689 kb on - strand at 1204.770 kb on - strand at 1204.770 kb on - strand at 1204.808 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1205.070 kb on + strand, within Psest_1111 at 1205.071 kb on - strand, within Psest_1111 at 1205.071 kb on - strand, within Psest_1111 at 1205.176 kb on - strand, within Psest_1111 at 1205.380 kb on - strand, within Psest_1111 at 1205.425 kb on - strand, within Psest_1111 at 1205.575 kb on - strand, within Psest_1111 at 1205.667 kb on - strand, within Psest_1111 at 1206.363 kb on + strand at 1206.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 1,204,689 - +0.9 1,204,689 - -0.8 1,204,770 - -1.5 1,204,770 - -0.4 1,204,808 + Psest_1111 0.11 +0.5 1,204,896 + Psest_1111 0.16 -1.0 1,204,896 + Psest_1111 0.16 -1.7 1,204,896 + Psest_1111 0.16 +0.2 1,205,070 + Psest_1111 0.26 -1.7 1,205,071 - Psest_1111 0.26 -0.2 1,205,071 - Psest_1111 0.26 -0.5 1,205,176 - Psest_1111 0.32 -0.9 1,205,380 - Psest_1111 0.44 -1.7 1,205,425 - Psest_1111 0.46 -0.5 1,205,575 - Psest_1111 0.55 +0.1 1,205,667 - Psest_1111 0.60 +1.1 1,206,363 + -0.6 1,206,510 + -2.2
Or see this region's nucleotide sequence