Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1018 and HP15_1019 are separated by 5 nucleotides HP15_1019 and HP15_1020 overlap by 4 nucleotides
HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360
_1018
HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449
_1019
HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071
_1020
Position (kb)
1032
1033
1034
1035
1036 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1031.397 kb on - strand, within HP15_1018 at 1031.397 kb on - strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.420 kb on - strand, within HP15_1018 at 1031.525 kb on + strand, within HP15_1018 at 1031.570 kb on - strand, within HP15_1018 at 1031.842 kb on - strand, within HP15_1018 at 1031.879 kb on + strand, within HP15_1018 at 1032.054 kb on + strand, within HP15_1018 at 1032.062 kb on - strand, within HP15_1018 at 1032.097 kb on - strand, within HP15_1018 at 1032.111 kb on + strand, within HP15_1018 at 1032.119 kb on - strand, within HP15_1018 at 1032.354 kb on + strand at 1032.372 kb on + strand at 1032.594 kb on - strand at 1032.596 kb on + strand at 1032.661 kb on + strand at 1032.671 kb on + strand at 1032.678 kb on + strand, within HP15_1019 at 1032.742 kb on + strand, within HP15_1019 at 1032.797 kb on + strand, within HP15_1019 at 1032.797 kb on + strand, within HP15_1019 at 1032.817 kb on - strand, within HP15_1019 at 1032.966 kb on - strand, within HP15_1019 at 1033.108 kb on - strand, within HP15_1019 at 1033.212 kb on - strand, within HP15_1019 at 1033.242 kb on - strand, within HP15_1019 at 1033.285 kb on - strand, within HP15_1019 at 1033.359 kb on + strand, within HP15_1019 at 1033.359 kb on + strand, within HP15_1019 at 1033.463 kb on + strand, within HP15_1019 at 1033.510 kb on + strand, within HP15_1019 at 1033.523 kb on + strand, within HP15_1019 at 1033.796 kb on + strand, within HP15_1019 at 1033.814 kb on - strand, within HP15_1019 at 1033.949 kb on + strand, within HP15_1019 at 1033.949 kb on + strand, within HP15_1019 at 1034.030 kb on - strand, within HP15_1019 at 1034.121 kb on - strand, within HP15_1019 at 1034.134 kb on + strand, within HP15_1019 at 1034.147 kb on - strand, within HP15_1019 at 1034.434 kb on + strand, within HP15_1019 at 1034.644 kb on - strand, within HP15_1019 at 1034.716 kb on - strand, within HP15_1019 at 1034.966 kb on - strand, within HP15_1019 at 1034.998 kb on - strand, within HP15_1019 at 1035.085 kb on - strand, within HP15_1019 at 1035.150 kb on - strand at 1035.274 kb on + strand at 1035.274 kb on + strand at 1035.282 kb on - strand at 1035.310 kb on - strand at 1035.312 kb on + strand at 1035.325 kb on - strand at 1035.325 kb on - strand at 1035.444 kb on + strand at 1035.494 kb on - strand at 1035.544 kb on - strand at 1035.544 kb on - strand at 1035.607 kb on - strand at 1035.724 kb on + strand, within HP15_1020 at 1035.857 kb on + strand, within HP15_1020 at 1035.913 kb on + strand, within HP15_1020 at 1035.925 kb on - strand, within HP15_1020 at 1036.094 kb on - strand, within HP15_1020 at 1036.094 kb on - strand, within HP15_1020 at 1036.096 kb on + strand, within HP15_1020 at 1036.203 kb on - strand, within HP15_1020 at 1036.426 kb on + strand, within HP15_1020 at 1036.432 kb on + strand, within HP15_1020 at 1036.435 kb on - strand, within HP15_1020
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,031,397 - HP15_1018 0.16 -5.3 1,031,397 - HP15_1018 0.16 -6.3 1,031,412 + HP15_1018 0.17 -2.3 1,031,412 + HP15_1018 0.17 -5.0 1,031,412 + HP15_1018 0.17 -6.2 1,031,412 + HP15_1018 0.17 -5.5 1,031,420 - HP15_1018 0.18 -3.6 1,031,525 + HP15_1018 0.27 -4.7 1,031,570 - HP15_1018 0.31 -4.0 1,031,842 - HP15_1018 0.55 -3.8 1,031,879 + HP15_1018 0.58 -2.3 1,032,054 + HP15_1018 0.73 -4.0 1,032,062 - HP15_1018 0.74 -1.3 1,032,097 - HP15_1018 0.77 -4.4 1,032,111 + HP15_1018 0.78 -2.8 1,032,119 - HP15_1018 0.79 -3.3 1,032,354 + -4.3 1,032,372 + -1.9 1,032,594 - -4.0 1,032,596 + -2.8 1,032,661 + -5.9 1,032,671 + -3.5 1,032,678 + HP15_1019 0.10 -0.3 1,032,742 + HP15_1019 0.12 -4.7 1,032,797 + HP15_1019 0.14 -5.8 1,032,797 + HP15_1019 0.14 -3.3 1,032,817 - HP15_1019 0.15 -0.3 1,032,966 - HP15_1019 0.19 -6.4 1,033,108 - HP15_1019 0.24 -0.9 1,033,212 - HP15_1019 0.27 -5.0 1,033,242 - HP15_1019 0.28 -2.8 1,033,285 - HP15_1019 0.30 -2.4 1,033,359 + HP15_1019 0.32 -3.8 1,033,359 + HP15_1019 0.32 +0.5 1,033,463 + HP15_1019 0.36 -3.4 1,033,510 + HP15_1019 0.37 -2.8 1,033,523 + HP15_1019 0.38 -4.2 1,033,796 + HP15_1019 0.46 -2.9 1,033,814 - HP15_1019 0.47 -4.3 1,033,949 + HP15_1019 0.51 -4.3 1,033,949 + HP15_1019 0.51 -5.0 1,034,030 - HP15_1019 0.54 -7.1 1,034,121 - HP15_1019 0.57 -3.9 1,034,134 + HP15_1019 0.57 -4.8 1,034,147 - HP15_1019 0.58 -3.9 1,034,434 + HP15_1019 0.67 -4.9 1,034,644 - HP15_1019 0.74 -3.6 1,034,716 - HP15_1019 0.76 -5.8 1,034,966 - HP15_1019 0.84 -6.2 1,034,998 - HP15_1019 0.85 -1.7 1,035,085 - HP15_1019 0.88 -6.1 1,035,150 - -6.0 1,035,274 + -6.9 1,035,274 + -2.9 1,035,282 - -5.8 1,035,310 - -3.1 1,035,312 + -5.3 1,035,325 - -5.3 1,035,325 - -2.5 1,035,444 + -0.2 1,035,494 - -0.9 1,035,544 - -1.0 1,035,544 - +1.5 1,035,607 - +0.3 1,035,724 + HP15_1020 0.17 +0.5 1,035,857 + HP15_1020 0.25 +0.2 1,035,913 + HP15_1020 0.29 +0.3 1,035,925 - HP15_1020 0.29 -0.5 1,036,094 - HP15_1020 0.40 +0.3 1,036,094 - HP15_1020 0.40 +0.5 1,036,096 + HP15_1020 0.40 -0.1 1,036,203 - HP15_1020 0.47 -1.0 1,036,426 + HP15_1020 0.60 +0.6 1,036,432 + HP15_1020 0.61 +0.2 1,036,435 - HP15_1020 0.61 -0.7
Or see this region's nucleotide sequence