Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3465 and Dsui_3466 are separated by 19 nucleotides Dsui_3466 and Dsui_3467 overlap by 8 nucleotides Dsui_3467 and Dsui_3468 are separated by 94 nucleotides
Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807
_3465
Dsui_3466: Dsui_3466 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,729,827 to 3,730,186
_3466
Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525
_3467
Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789
_3468
Position (kb)
3730
3731
3732 Strain fitness (log2 ratio)
-1
0
1
2 at 3729.263 kb on + strand, within Dsui_3465 at 3729.268 kb on + strand, within Dsui_3465 at 3729.281 kb on + strand, within Dsui_3465 at 3729.291 kb on + strand, within Dsui_3465 at 3729.433 kb on - strand at 3729.466 kb on - strand at 3729.664 kb on + strand at 3729.809 kb on - strand at 3729.852 kb on + strand at 3730.029 kb on - strand at 3730.250 kb on + strand at 3730.251 kb on + strand at 3730.275 kb on - strand at 3730.508 kb on - strand, within Dsui_3467 at 3730.680 kb on - strand at 3730.691 kb on + strand at 3730.783 kb on + strand, within Dsui_3467 at 3730.887 kb on - strand, within Dsui_3467 at 3730.948 kb on - strand at 3731.037 kb on - strand at 3731.084 kb on + strand, within Dsui_3467 at 3731.110 kb on - strand, within Dsui_3467 at 3731.115 kb on - strand, within Dsui_3467 at 3731.728 kb on + strand at 3731.736 kb on - strand at 3731.844 kb on + strand, within Dsui_3468 at 3731.852 kb on - strand at 3731.881 kb on + strand, within Dsui_3468 at 3731.961 kb on + strand, within Dsui_3468 at 3732.001 kb on - strand at 3732.307 kb on + strand, within Dsui_3468 at 3732.315 kb on - strand, within Dsui_3468 at 3732.409 kb on + strand, within Dsui_3468 at 3732.513 kb on + strand, within Dsui_3468
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,729,263 + Dsui_3465 0.70 -1.5 3,729,268 + Dsui_3465 0.71 -0.7 3,729,281 + Dsui_3465 0.71 -0.5 3,729,291 + Dsui_3465 0.72 -0.2 3,729,433 - +1.5 3,729,466 - +1.9 3,729,664 + +0.5 3,729,809 - +0.9 3,729,852 + +0.5 3,730,029 - -0.4 3,730,250 + -1.5 3,730,251 + +0.1 3,730,275 - +1.3 3,730,508 - Dsui_3467 0.24 -0.7 3,730,680 - -0.1 3,730,691 + +0.3 3,730,783 + Dsui_3467 0.45 -1.3 3,730,887 - Dsui_3467 0.53 +0.1 3,730,948 - +1.9 3,731,037 - +1.9 3,731,084 + Dsui_3467 0.67 -0.4 3,731,110 - Dsui_3467 0.69 -0.4 3,731,115 - Dsui_3467 0.69 -0.7 3,731,728 + -0.1 3,731,736 - -0.7 3,731,844 + Dsui_3468 0.19 -0.0 3,731,852 - +0.1 3,731,881 + Dsui_3468 0.22 +0.4 3,731,961 + Dsui_3468 0.29 -0.2 3,732,001 - -0.1 3,732,307 + Dsui_3468 0.59 +0.4 3,732,315 - Dsui_3468 0.59 +0.1 3,732,409 + Dsui_3468 0.67 +0.0 3,732,513 + Dsui_3468 0.76 +0.3
Or see this region's nucleotide sequence