Strain Fitness in Dechlorosoma suillum PS around Dsui_3467

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3465 and Dsui_3466 are separated by 19 nucleotidesDsui_3466 and Dsui_3467 overlap by 8 nucleotidesDsui_3467 and Dsui_3468 are separated by 94 nucleotides Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807 _3465 Dsui_3466: Dsui_3466 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,729,827 to 3,730,186 _3466 Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525 _3467 Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789 _3468 Position (kb) 3730 3731 3732Strain fitness (log2 ratio) -1 0 1 2at 3729.263 kb on + strand, within Dsui_3465at 3729.268 kb on + strand, within Dsui_3465at 3729.281 kb on + strand, within Dsui_3465at 3729.291 kb on + strand, within Dsui_3465at 3729.433 kb on - strandat 3729.466 kb on - strandat 3729.664 kb on + strandat 3729.809 kb on - strandat 3729.852 kb on + strandat 3730.029 kb on - strandat 3730.250 kb on + strandat 3730.251 kb on + strandat 3730.275 kb on - strandat 3730.508 kb on - strand, within Dsui_3467at 3730.680 kb on - strandat 3730.691 kb on + strandat 3730.783 kb on + strand, within Dsui_3467at 3730.887 kb on - strand, within Dsui_3467at 3730.948 kb on - strandat 3731.037 kb on - strandat 3731.084 kb on + strand, within Dsui_3467at 3731.110 kb on - strand, within Dsui_3467at 3731.115 kb on - strand, within Dsui_3467at 3731.728 kb on + strandat 3731.736 kb on - strandat 3731.844 kb on + strand, within Dsui_3468at 3731.852 kb on - strandat 3731.881 kb on + strand, within Dsui_3468at 3731.961 kb on + strand, within Dsui_3468at 3732.001 kb on - strandat 3732.307 kb on + strand, within Dsui_3468at 3732.315 kb on - strand, within Dsui_3468at 3732.409 kb on + strand, within Dsui_3468at 3732.513 kb on + strand, within Dsui_3468

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,729,263 + Dsui_3465 0.70 -1.5
3,729,268 + Dsui_3465 0.71 -0.7
3,729,281 + Dsui_3465 0.71 -0.5
3,729,291 + Dsui_3465 0.72 -0.2
3,729,433 - +1.5
3,729,466 - +1.9
3,729,664 + +0.5
3,729,809 - +0.9
3,729,852 + +0.5
3,730,029 - -0.4
3,730,250 + -1.5
3,730,251 + +0.1
3,730,275 - +1.3
3,730,508 - Dsui_3467 0.24 -0.7
3,730,680 - -0.1
3,730,691 + +0.3
3,730,783 + Dsui_3467 0.45 -1.3
3,730,887 - Dsui_3467 0.53 +0.1
3,730,948 - +1.9
3,731,037 - +1.9
3,731,084 + Dsui_3467 0.67 -0.4
3,731,110 - Dsui_3467 0.69 -0.4
3,731,115 - Dsui_3467 0.69 -0.7
3,731,728 + -0.1
3,731,736 - -0.7
3,731,844 + Dsui_3468 0.19 -0.0
3,731,852 - +0.1
3,731,881 + Dsui_3468 0.22 +0.4
3,731,961 + Dsui_3468 0.29 -0.2
3,732,001 - -0.1
3,732,307 + Dsui_3468 0.59 +0.4
3,732,315 - Dsui_3468 0.59 +0.1
3,732,409 + Dsui_3468 0.67 +0.0
3,732,513 + Dsui_3468 0.76 +0.3

Or see this region's nucleotide sequence