Strain Fitness in Dechlorosoma suillum PS around Dsui_3375

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3373 and Dsui_3374 are separated by 20 nucleotidesDsui_3374 and Dsui_3375 are separated by 143 nucleotidesDsui_3375 and Dsui_3376 are separated by 180 nucleotides Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114 _3373 Dsui_3374: Dsui_3374 - cyclic nucleotide-binding protein, at 3,617,135 to 3,617,500 _3374 Dsui_3375: Dsui_3375 - hypothetical protein, at 3,617,644 to 3,617,820 _3375 Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167 _3376 Position (kb) 3617 3618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3616.704 kb on + strand, within Dsui_3373at 3616.716 kb on + strand, within Dsui_3373at 3616.716 kb on + strand, within Dsui_3373at 3616.745 kb on + strand, within Dsui_3373at 3616.835 kb on - strand, within Dsui_3373at 3616.949 kb on + strandat 3617.150 kb on - strandat 3617.208 kb on + strand, within Dsui_3374at 3617.208 kb on + strand, within Dsui_3374at 3617.247 kb on - strandat 3617.335 kb on + strand, within Dsui_3374at 3617.354 kb on + strand, within Dsui_3374at 3617.367 kb on + strand, within Dsui_3374at 3617.428 kb on - strandat 3617.531 kb on + strandat 3617.769 kb on - strand, within Dsui_3375at 3618.125 kb on - strand, within Dsui_3376at 3618.187 kb on - strand, within Dsui_3376at 3618.207 kb on + strandat 3618.345 kb on - strand, within Dsui_3376at 3618.358 kb on + strandat 3618.382 kb on + strandat 3618.384 kb on + strandat 3618.509 kb on - strand, within Dsui_3376at 3618.724 kb on - strand, within Dsui_3376at 3618.798 kb on - strand, within Dsui_3376at 3618.798 kb on - strand, within Dsui_3376

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,616,704 + Dsui_3373 0.76 -0.3
3,616,716 + Dsui_3373 0.76 -2.1
3,616,716 + Dsui_3373 0.76 -0.5
3,616,745 + Dsui_3373 0.78 +0.2
3,616,835 - Dsui_3373 0.83 -0.1
3,616,949 + -0.2
3,617,150 - -0.1
3,617,208 + Dsui_3374 0.20 -0.6
3,617,208 + Dsui_3374 0.20 -0.4
3,617,247 - +0.1
3,617,335 + Dsui_3374 0.55 +0.1
3,617,354 + Dsui_3374 0.60 -0.4
3,617,367 + Dsui_3374 0.63 -0.3
3,617,428 - +2.9
3,617,531 + -0.0
3,617,769 - Dsui_3375 0.71 -1.1
3,618,125 - Dsui_3376 0.11 +0.4
3,618,187 - Dsui_3376 0.16 -0.6
3,618,207 + -0.1
3,618,345 - Dsui_3376 0.29 +0.6
3,618,358 + +0.9
3,618,382 + +2.3
3,618,384 + -0.1
3,618,509 - Dsui_3376 0.44 +0.3
3,618,724 - Dsui_3376 0.62 -0.2
3,618,798 - Dsui_3376 0.68 -0.8
3,618,798 - Dsui_3376 0.68 +0.5

Or see this region's nucleotide sequence