Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3305 and Dsui_3306 overlap by 4 nucleotides Dsui_3306 and Dsui_3307 are separated by 189 nucleotides
Dsui_3305: Dsui_3305 - parallel beta-helix repeat (two copies), at 3,546,727 to 3,548,118
_3305
Dsui_3306: Dsui_3306 - hypothetical protein, at 3,548,115 to 3,549,098
_3306
Dsui_3307: Dsui_3307 - cytochrome c553, at 3,549,288 to 3,550,019
_3307
Position (kb)
3548
3549
3550 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3547.297 kb on - strand, within Dsui_3305 at 3547.303 kb on - strand, within Dsui_3305 at 3547.305 kb on + strand, within Dsui_3305 at 3547.374 kb on + strand, within Dsui_3305 at 3547.423 kb on - strand, within Dsui_3305 at 3547.527 kb on + strand, within Dsui_3305 at 3547.581 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.658 kb on - strand, within Dsui_3305 at 3547.706 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305 at 3547.749 kb on - strand, within Dsui_3305 at 3547.804 kb on + strand, within Dsui_3305 at 3547.812 kb on + strand, within Dsui_3305 at 3547.812 kb on - strand, within Dsui_3305 at 3547.818 kb on + strand, within Dsui_3305 at 3547.888 kb on - strand, within Dsui_3305 at 3548.165 kb on + strand at 3548.212 kb on + strand at 3548.220 kb on - strand, within Dsui_3306 at 3548.290 kb on + strand, within Dsui_3306 at 3548.332 kb on - strand, within Dsui_3306 at 3548.410 kb on - strand, within Dsui_3306 at 3548.479 kb on - strand, within Dsui_3306 at 3548.531 kb on + strand, within Dsui_3306 at 3548.541 kb on + strand, within Dsui_3306 at 3548.649 kb on + strand, within Dsui_3306 at 3548.654 kb on + strand, within Dsui_3306 at 3548.677 kb on - strand, within Dsui_3306 at 3548.677 kb on - strand, within Dsui_3306 at 3548.754 kb on - strand, within Dsui_3306 at 3548.784 kb on + strand, within Dsui_3306 at 3548.792 kb on - strand, within Dsui_3306 at 3548.814 kb on - strand, within Dsui_3306 at 3548.817 kb on - strand, within Dsui_3306 at 3548.828 kb on + strand, within Dsui_3306 at 3548.841 kb on - strand, within Dsui_3306 at 3548.971 kb on + strand, within Dsui_3306 at 3548.998 kb on - strand, within Dsui_3306 at 3549.147 kb on + strand at 3549.183 kb on - strand at 3549.203 kb on + strand at 3549.209 kb on - strand at 3549.238 kb on - strand at 3549.277 kb on - strand at 3549.312 kb on - strand at 3549.312 kb on - strand at 3549.353 kb on - strand at 3549.360 kb on + strand at 3549.405 kb on + strand, within Dsui_3307 at 3549.431 kb on - strand, within Dsui_3307 at 3549.438 kb on + strand, within Dsui_3307 at 3549.490 kb on + strand, within Dsui_3307 at 3549.498 kb on - strand, within Dsui_3307 at 3549.498 kb on - strand, within Dsui_3307 at 3549.632 kb on - strand, within Dsui_3307 at 3549.692 kb on + strand at 3549.726 kb on + strand at 3549.754 kb on + strand, within Dsui_3307 at 3549.757 kb on - strand, within Dsui_3307 at 3549.759 kb on + strand, within Dsui_3307 at 3549.767 kb on - strand, within Dsui_3307 at 3549.841 kb on - strand, within Dsui_3307 at 3549.899 kb on + strand, within Dsui_3307 at 3549.949 kb on - strand at 3549.979 kb on - strand at 3549.979 kb on - strand at 3549.986 kb on + strand at 3550.000 kb on + strand at 3550.027 kb on + strand at 3550.027 kb on + strand at 3550.035 kb on - strand at 3550.035 kb on - strand at 3550.035 kb on - strand at 3550.051 kb on + strand at 3550.054 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,547,297 - Dsui_3305 0.41 -1.6 3,547,303 - Dsui_3305 0.41 -1.2 3,547,305 + Dsui_3305 0.42 -1.0 3,547,374 + Dsui_3305 0.46 -1.7 3,547,423 - Dsui_3305 0.50 -0.3 3,547,527 + Dsui_3305 0.57 -1.1 3,547,581 + Dsui_3305 0.61 -2.9 3,547,650 + Dsui_3305 0.66 -2.0 3,547,650 + Dsui_3305 0.66 -1.3 3,547,650 + Dsui_3305 0.66 +0.6 3,547,658 - Dsui_3305 0.67 -1.3 3,547,706 - Dsui_3305 0.70 -1.5 3,547,721 - Dsui_3305 0.71 -1.1 3,547,721 - Dsui_3305 0.71 -1.3 3,547,749 - Dsui_3305 0.73 -1.0 3,547,804 + Dsui_3305 0.77 -1.8 3,547,812 + Dsui_3305 0.78 -0.8 3,547,812 - Dsui_3305 0.78 -1.1 3,547,818 + Dsui_3305 0.78 -0.9 3,547,888 - Dsui_3305 0.83 -0.1 3,548,165 + -0.3 3,548,212 + -1.4 3,548,220 - Dsui_3306 0.11 -1.7 3,548,290 + Dsui_3306 0.18 -1.6 3,548,332 - Dsui_3306 0.22 -1.3 3,548,410 - Dsui_3306 0.30 -1.2 3,548,479 - Dsui_3306 0.37 +0.3 3,548,531 + Dsui_3306 0.42 -1.8 3,548,541 + Dsui_3306 0.43 -1.4 3,548,649 + Dsui_3306 0.54 -0.3 3,548,654 + Dsui_3306 0.55 -1.5 3,548,677 - Dsui_3306 0.57 -1.0 3,548,677 - Dsui_3306 0.57 -1.0 3,548,754 - Dsui_3306 0.65 -1.3 3,548,784 + Dsui_3306 0.68 -1.3 3,548,792 - Dsui_3306 0.69 -0.6 3,548,814 - Dsui_3306 0.71 -0.9 3,548,817 - Dsui_3306 0.71 -0.8 3,548,828 + Dsui_3306 0.72 -1.6 3,548,841 - Dsui_3306 0.74 -1.3 3,548,971 + Dsui_3306 0.87 -0.5 3,548,998 - Dsui_3306 0.90 -0.7 3,549,147 + +0.6 3,549,183 - -0.0 3,549,203 + -0.3 3,549,209 - -0.0 3,549,238 - -0.2 3,549,277 - +0.1 3,549,312 - +1.7 3,549,312 - -1.2 3,549,353 - -0.5 3,549,360 + +0.1 3,549,405 + Dsui_3307 0.16 -0.8 3,549,431 - Dsui_3307 0.20 -1.8 3,549,438 + Dsui_3307 0.20 -0.8 3,549,490 + Dsui_3307 0.28 -0.7 3,549,498 - Dsui_3307 0.29 -0.4 3,549,498 - Dsui_3307 0.29 -0.9 3,549,632 - Dsui_3307 0.47 +0.0 3,549,692 + -0.4 3,549,726 + -0.1 3,549,754 + Dsui_3307 0.64 -0.8 3,549,757 - Dsui_3307 0.64 -0.8 3,549,759 + Dsui_3307 0.64 +0.0 3,549,767 - Dsui_3307 0.65 -0.5 3,549,841 - Dsui_3307 0.76 -0.7 3,549,899 + Dsui_3307 0.83 -1.2 3,549,949 - -1.0 3,549,979 - -0.7 3,549,979 - -0.4 3,549,986 + -0.4 3,550,000 + -0.4 3,550,027 + +1.1 3,550,027 + -1.9 3,550,035 - -0.0 3,550,035 - -0.1 3,550,035 - +0.0 3,550,051 + -0.5 3,550,054 - -0.3 3,550,059 - +0.2 3,550,059 - -0.6 3,550,059 - +0.5 3,550,059 - +0.0
Or see this region's nucleotide sequence