Strain Fitness in Dechlorosoma suillum PS around Dsui_3306

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3305 and Dsui_3306 overlap by 4 nucleotidesDsui_3306 and Dsui_3307 are separated by 189 nucleotides Dsui_3305: Dsui_3305 - parallel beta-helix repeat (two copies), at 3,546,727 to 3,548,118 _3305 Dsui_3306: Dsui_3306 - hypothetical protein, at 3,548,115 to 3,549,098 _3306 Dsui_3307: Dsui_3307 - cytochrome c553, at 3,549,288 to 3,550,019 _3307 Position (kb) 3548 3549 3550Strain fitness (log2 ratio) -3 -2 -1 0 1at 3547.297 kb on - strand, within Dsui_3305at 3547.303 kb on - strand, within Dsui_3305at 3547.305 kb on + strand, within Dsui_3305at 3547.374 kb on + strand, within Dsui_3305at 3547.423 kb on - strand, within Dsui_3305at 3547.527 kb on + strand, within Dsui_3305at 3547.581 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.658 kb on - strand, within Dsui_3305at 3547.706 kb on - strand, within Dsui_3305at 3547.721 kb on - strand, within Dsui_3305at 3547.721 kb on - strand, within Dsui_3305at 3547.749 kb on - strand, within Dsui_3305at 3547.804 kb on + strand, within Dsui_3305at 3547.812 kb on + strand, within Dsui_3305at 3547.812 kb on - strand, within Dsui_3305at 3547.818 kb on + strand, within Dsui_3305at 3547.888 kb on - strand, within Dsui_3305at 3548.165 kb on + strandat 3548.212 kb on + strandat 3548.220 kb on - strand, within Dsui_3306at 3548.290 kb on + strand, within Dsui_3306at 3548.332 kb on - strand, within Dsui_3306at 3548.410 kb on - strand, within Dsui_3306at 3548.479 kb on - strand, within Dsui_3306at 3548.531 kb on + strand, within Dsui_3306at 3548.541 kb on + strand, within Dsui_3306at 3548.649 kb on + strand, within Dsui_3306at 3548.654 kb on + strand, within Dsui_3306at 3548.677 kb on - strand, within Dsui_3306at 3548.677 kb on - strand, within Dsui_3306at 3548.754 kb on - strand, within Dsui_3306at 3548.784 kb on + strand, within Dsui_3306at 3548.792 kb on - strand, within Dsui_3306at 3548.814 kb on - strand, within Dsui_3306at 3548.817 kb on - strand, within Dsui_3306at 3548.828 kb on + strand, within Dsui_3306at 3548.841 kb on - strand, within Dsui_3306at 3548.971 kb on + strand, within Dsui_3306at 3548.998 kb on - strand, within Dsui_3306at 3549.147 kb on + strandat 3549.183 kb on - strandat 3549.203 kb on + strandat 3549.209 kb on - strandat 3549.238 kb on - strandat 3549.277 kb on - strandat 3549.312 kb on - strandat 3549.312 kb on - strandat 3549.353 kb on - strandat 3549.360 kb on + strandat 3549.405 kb on + strand, within Dsui_3307at 3549.431 kb on - strand, within Dsui_3307at 3549.438 kb on + strand, within Dsui_3307at 3549.490 kb on + strand, within Dsui_3307at 3549.498 kb on - strand, within Dsui_3307at 3549.498 kb on - strand, within Dsui_3307at 3549.632 kb on - strand, within Dsui_3307at 3549.692 kb on + strandat 3549.726 kb on + strandat 3549.754 kb on + strand, within Dsui_3307at 3549.757 kb on - strand, within Dsui_3307at 3549.759 kb on + strand, within Dsui_3307at 3549.767 kb on - strand, within Dsui_3307at 3549.841 kb on - strand, within Dsui_3307at 3549.899 kb on + strand, within Dsui_3307at 3549.949 kb on - strandat 3549.979 kb on - strandat 3549.979 kb on - strandat 3549.986 kb on + strandat 3550.000 kb on + strandat 3550.027 kb on + strandat 3550.027 kb on + strandat 3550.035 kb on - strandat 3550.035 kb on - strandat 3550.035 kb on - strandat 3550.051 kb on + strandat 3550.054 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,547,297 - Dsui_3305 0.41 -1.6
3,547,303 - Dsui_3305 0.41 -1.2
3,547,305 + Dsui_3305 0.42 -1.0
3,547,374 + Dsui_3305 0.46 -1.7
3,547,423 - Dsui_3305 0.50 -0.3
3,547,527 + Dsui_3305 0.57 -1.1
3,547,581 + Dsui_3305 0.61 -2.9
3,547,650 + Dsui_3305 0.66 -2.0
3,547,650 + Dsui_3305 0.66 -1.3
3,547,650 + Dsui_3305 0.66 +0.6
3,547,658 - Dsui_3305 0.67 -1.3
3,547,706 - Dsui_3305 0.70 -1.5
3,547,721 - Dsui_3305 0.71 -1.1
3,547,721 - Dsui_3305 0.71 -1.3
3,547,749 - Dsui_3305 0.73 -1.0
3,547,804 + Dsui_3305 0.77 -1.8
3,547,812 + Dsui_3305 0.78 -0.8
3,547,812 - Dsui_3305 0.78 -1.1
3,547,818 + Dsui_3305 0.78 -0.9
3,547,888 - Dsui_3305 0.83 -0.1
3,548,165 + -0.3
3,548,212 + -1.4
3,548,220 - Dsui_3306 0.11 -1.7
3,548,290 + Dsui_3306 0.18 -1.6
3,548,332 - Dsui_3306 0.22 -1.3
3,548,410 - Dsui_3306 0.30 -1.2
3,548,479 - Dsui_3306 0.37 +0.3
3,548,531 + Dsui_3306 0.42 -1.8
3,548,541 + Dsui_3306 0.43 -1.4
3,548,649 + Dsui_3306 0.54 -0.3
3,548,654 + Dsui_3306 0.55 -1.5
3,548,677 - Dsui_3306 0.57 -1.0
3,548,677 - Dsui_3306 0.57 -1.0
3,548,754 - Dsui_3306 0.65 -1.3
3,548,784 + Dsui_3306 0.68 -1.3
3,548,792 - Dsui_3306 0.69 -0.6
3,548,814 - Dsui_3306 0.71 -0.9
3,548,817 - Dsui_3306 0.71 -0.8
3,548,828 + Dsui_3306 0.72 -1.6
3,548,841 - Dsui_3306 0.74 -1.3
3,548,971 + Dsui_3306 0.87 -0.5
3,548,998 - Dsui_3306 0.90 -0.7
3,549,147 + +0.6
3,549,183 - -0.0
3,549,203 + -0.3
3,549,209 - -0.0
3,549,238 - -0.2
3,549,277 - +0.1
3,549,312 - +1.7
3,549,312 - -1.2
3,549,353 - -0.5
3,549,360 + +0.1
3,549,405 + Dsui_3307 0.16 -0.8
3,549,431 - Dsui_3307 0.20 -1.8
3,549,438 + Dsui_3307 0.20 -0.8
3,549,490 + Dsui_3307 0.28 -0.7
3,549,498 - Dsui_3307 0.29 -0.4
3,549,498 - Dsui_3307 0.29 -0.9
3,549,632 - Dsui_3307 0.47 +0.0
3,549,692 + -0.4
3,549,726 + -0.1
3,549,754 + Dsui_3307 0.64 -0.8
3,549,757 - Dsui_3307 0.64 -0.8
3,549,759 + Dsui_3307 0.64 +0.0
3,549,767 - Dsui_3307 0.65 -0.5
3,549,841 - Dsui_3307 0.76 -0.7
3,549,899 + Dsui_3307 0.83 -1.2
3,549,949 - -1.0
3,549,979 - -0.7
3,549,979 - -0.4
3,549,986 + -0.4
3,550,000 + -0.4
3,550,027 + +1.1
3,550,027 + -1.9
3,550,035 - -0.0
3,550,035 - -0.1
3,550,035 - +0.0
3,550,051 + -0.5
3,550,054 - -0.3
3,550,059 - +0.2
3,550,059 - -0.6
3,550,059 - +0.5
3,550,059 - +0.0

Or see this region's nucleotide sequence