Strain Fitness in Dechlorosoma suillum PS around Dsui_3209

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3208 and Dsui_3209 are separated by 68 nucleotidesDsui_3209 and Dsui_3210 are separated by 10 nucleotidesDsui_3210 and Dsui_3211 are separated by 241 nucleotides Dsui_3208: Dsui_3208 - cysteine synthase A, at 3,443,001 to 3,443,933 _3208 Dsui_3209: Dsui_3209 - putative esterase of the alpha/beta hydrolase fold protein, at 3,444,002 to 3,444,538 _3209 Dsui_3210: Dsui_3210 - hypothetical protein, at 3,444,549 to 3,445,031 _3210 Dsui_3211: Dsui_3211 - glutamate dehydrogenase/leucine dehydrogenase, at 3,445,273 to 3,446,619 _3211 Position (kb) 3444 3445Strain fitness (log2 ratio) -1 0 1 2at 3443.015 kb on + strandat 3443.015 kb on + strandat 3443.016 kb on + strandat 3443.023 kb on - strandat 3443.024 kb on - strandat 3443.125 kb on + strand, within Dsui_3208at 3443.237 kb on + strand, within Dsui_3208at 3443.315 kb on + strand, within Dsui_3208at 3443.315 kb on + strand, within Dsui_3208at 3443.323 kb on - strand, within Dsui_3208at 3443.394 kb on - strandat 3443.424 kb on + strand, within Dsui_3208at 3443.468 kb on + strand, within Dsui_3208at 3443.486 kb on - strandat 3443.537 kb on + strand, within Dsui_3208at 3443.658 kb on + strand, within Dsui_3208at 3443.678 kb on - strand, within Dsui_3208at 3443.791 kb on - strandat 3443.810 kb on + strand, within Dsui_3208at 3443.869 kb on - strandat 3443.908 kb on - strandat 3443.951 kb on - strandat 3444.101 kb on - strandat 3444.138 kb on - strand, within Dsui_3209at 3444.138 kb on - strand, within Dsui_3209at 3444.148 kb on - strand, within Dsui_3209at 3444.161 kb on - strandat 3444.291 kb on - strand, within Dsui_3209at 3444.304 kb on - strand, within Dsui_3209at 3444.347 kb on + strand, within Dsui_3209at 3444.365 kb on - strandat 3444.433 kb on + strand, within Dsui_3209at 3444.469 kb on + strand, within Dsui_3209at 3444.477 kb on - strandat 3444.525 kb on + strandat 3444.654 kb on - strand, within Dsui_3210at 3444.717 kb on + strand, within Dsui_3210at 3444.773 kb on - strand, within Dsui_3210at 3444.836 kb on + strand, within Dsui_3210at 3444.894 kb on + strand, within Dsui_3210at 3444.987 kb on - strandat 3445.009 kb on + strandat 3445.029 kb on + strandat 3445.057 kb on + strandat 3445.124 kb on - strandat 3445.159 kb on - strandat 3445.185 kb on + strandat 3445.211 kb on - strandat 3445.319 kb on - strandat 3445.360 kb on - strandat 3445.466 kb on + strand, within Dsui_3211at 3445.474 kb on - strand, within Dsui_3211at 3445.485 kb on + strand, within Dsui_3211at 3445.493 kb on - strand, within Dsui_3211at 3445.493 kb on - strand, within Dsui_3211at 3445.536 kb on + strand, within Dsui_3211

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,443,015 + -0.5
3,443,015 + -0.1
3,443,016 + -0.2
3,443,023 - +1.9
3,443,024 - +1.9
3,443,125 + Dsui_3208 0.13 +0.3
3,443,237 + Dsui_3208 0.25 -0.5
3,443,315 + Dsui_3208 0.34 +0.0
3,443,315 + Dsui_3208 0.34 -0.4
3,443,323 - Dsui_3208 0.35 +1.1
3,443,394 - +1.9
3,443,424 + Dsui_3208 0.45 -0.3
3,443,468 + Dsui_3208 0.50 -0.7
3,443,486 - +0.9
3,443,537 + Dsui_3208 0.57 -0.3
3,443,658 + Dsui_3208 0.70 -0.0
3,443,678 - Dsui_3208 0.73 +1.3
3,443,791 - +2.3
3,443,810 + Dsui_3208 0.87 -1.1
3,443,869 - +1.5
3,443,908 - +0.4
3,443,951 - +0.5
3,444,101 - -0.5
3,444,138 - Dsui_3209 0.25 +1.9
3,444,138 - Dsui_3209 0.25 -0.1
3,444,148 - Dsui_3209 0.27 -0.8
3,444,161 - +1.9
3,444,291 - Dsui_3209 0.54 -0.1
3,444,304 - Dsui_3209 0.56 -0.1
3,444,347 + Dsui_3209 0.64 -0.8
3,444,365 - -0.7
3,444,433 + Dsui_3209 0.80 +0.5
3,444,469 + Dsui_3209 0.87 +1.1
3,444,477 - +1.1
3,444,525 + -0.1
3,444,654 - Dsui_3210 0.22 +0.7
3,444,717 + Dsui_3210 0.35 +0.4
3,444,773 - Dsui_3210 0.46 -0.3
3,444,836 + Dsui_3210 0.59 -0.2
3,444,894 + Dsui_3210 0.71 +1.2
3,444,987 - +0.6
3,445,009 + +0.3
3,445,029 + +0.3
3,445,057 + +0.5
3,445,124 - +0.3
3,445,159 - +1.3
3,445,185 + +0.9
3,445,211 - +0.0
3,445,319 - -0.1
3,445,360 - +0.4
3,445,466 + Dsui_3211 0.14 +0.5
3,445,474 - Dsui_3211 0.15 -0.2
3,445,485 + Dsui_3211 0.16 +0.5
3,445,493 - Dsui_3211 0.16 -0.3
3,445,493 - Dsui_3211 0.16 -0.3
3,445,536 + Dsui_3211 0.20 +0.5

Or see this region's nucleotide sequence