Strain Fitness in Dechlorosoma suillum PS around Dsui_3205

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3204 and Dsui_3205 are separated by 90 nucleotidesDsui_3205 and Dsui_3206 are separated by 80 nucleotidesDsui_3206 and Dsui_3207 overlap by 7 nucleotides Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991 _3204 Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735 _3205 Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232 _3206 Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738 _3207 Position (kb) 3441 3442Strain fitness (log2 ratio) -2 -1 0 1 2at 3441.044 kb on - strandat 3441.175 kb on - strand, within Dsui_3205at 3441.175 kb on - strand, within Dsui_3205at 3441.181 kb on - strand, within Dsui_3205at 3441.186 kb on - strand, within Dsui_3205at 3441.339 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.534 kb on + strandat 3441.534 kb on + strand, within Dsui_3205at 3441.557 kb on - strand, within Dsui_3205at 3441.574 kb on - strand, within Dsui_3205at 3441.614 kb on + strandat 3441.694 kb on - strandat 3441.697 kb on + strandat 3441.697 kb on + strandat 3441.781 kb on - strandat 3441.942 kb on + strand, within Dsui_3206at 3442.073 kb on + strand, within Dsui_3206at 3442.081 kb on - strand, within Dsui_3206at 3442.083 kb on - strand, within Dsui_3206at 3442.089 kb on - strand, within Dsui_3206at 3442.159 kb on + strandat 3442.167 kb on - strand, within Dsui_3206at 3442.484 kb on - strand, within Dsui_3207at 3442.513 kb on + strandat 3442.522 kb on - strand, within Dsui_3207at 3442.613 kb on + strandat 3442.621 kb on - strand, within Dsui_3207at 3442.695 kb on + strandat 3442.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,441,044 - +0.8
3,441,175 - Dsui_3205 0.14 +0.2
3,441,175 - Dsui_3205 0.14 +0.6
3,441,181 - Dsui_3205 0.15 -0.1
3,441,186 - Dsui_3205 0.16 +0.6
3,441,339 - Dsui_3205 0.39 +0.6
3,441,396 - Dsui_3205 0.48 +0.0
3,441,396 - Dsui_3205 0.48 +0.1
3,441,534 + +1.9
3,441,534 + Dsui_3205 0.69 +1.1
3,441,557 - Dsui_3205 0.73 +0.1
3,441,574 - Dsui_3205 0.75 +0.0
3,441,614 + -0.9
3,441,694 - -0.2
3,441,697 + +0.9
3,441,697 + -0.1
3,441,781 - +1.0
3,441,942 + Dsui_3206 0.30 +0.1
3,442,073 + Dsui_3206 0.62 +1.4
3,442,081 - Dsui_3206 0.64 +0.6
3,442,083 - Dsui_3206 0.64 +0.5
3,442,089 - Dsui_3206 0.65 -0.5
3,442,159 + +1.9
3,442,167 - Dsui_3206 0.84 +0.9
3,442,484 - Dsui_3207 0.50 -1.8
3,442,513 + +0.1
3,442,522 - Dsui_3207 0.58 -0.5
3,442,613 + +0.9
3,442,621 - Dsui_3207 0.77 +0.5
3,442,695 + +0.9
3,442,728 + +0.5

Or see this region's nucleotide sequence