Strain Fitness in Dechlorosoma suillum PS around Dsui_3167

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3166 and Dsui_3167 are separated by 93 nucleotidesDsui_3167 and Dsui_3168 overlap by 16 nucleotides Dsui_3166: Dsui_3166 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 3,394,184 to 3,395,152 _3166 Dsui_3167: Dsui_3167 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,395,246 to 3,397,426 _3167 Dsui_3168: Dsui_3168 - hypothetical protein, at 3,397,411 to 3,398,565 _3168 Position (kb) 3395 3396 3397 3398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3395.251 kb on - strandat 3395.400 kb on - strandat 3395.517 kb on - strand, within Dsui_3167at 3395.517 kb on - strand, within Dsui_3167at 3395.606 kb on - strand, within Dsui_3167at 3395.647 kb on + strand, within Dsui_3167at 3395.657 kb on + strand, within Dsui_3167at 3395.660 kb on - strand, within Dsui_3167at 3395.660 kb on - strand, within Dsui_3167at 3395.665 kb on - strand, within Dsui_3167at 3395.925 kb on - strand, within Dsui_3167at 3395.975 kb on - strand, within Dsui_3167at 3396.067 kb on + strandat 3396.137 kb on + strandat 3396.266 kb on - strand, within Dsui_3167at 3396.371 kb on + strandat 3396.373 kb on - strand, within Dsui_3167at 3396.422 kb on - strand, within Dsui_3167at 3396.422 kb on - strand, within Dsui_3167at 3396.422 kb on - strand, within Dsui_3167at 3396.470 kb on - strandat 3396.473 kb on + strandat 3396.481 kb on - strand, within Dsui_3167at 3396.625 kb on + strandat 3396.631 kb on + strandat 3396.750 kb on + strandat 3396.825 kb on - strand, within Dsui_3167at 3396.873 kb on - strand, within Dsui_3167at 3396.919 kb on - strand, within Dsui_3167at 3397.007 kb on - strand, within Dsui_3167at 3397.007 kb on - strand, within Dsui_3167at 3397.148 kb on - strand, within Dsui_3167at 3397.312 kb on - strandat 3397.380 kb on - strandat 3397.386 kb on - strandat 3397.392 kb on + strandat 3397.450 kb on - strandat 3397.478 kb on - strandat 3397.478 kb on - strandat 3397.509 kb on + strandat 3397.509 kb on + strandat 3397.509 kb on + strandat 3397.566 kb on + strandat 3397.588 kb on + strandat 3397.724 kb on - strand, within Dsui_3168at 3397.778 kb on - strandat 3397.911 kb on - strand, within Dsui_3168at 3398.250 kb on - strand, within Dsui_3168at 3398.313 kb on - strand, within Dsui_3168at 3398.355 kb on - strand, within Dsui_3168

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,395,251 - +0.3
3,395,400 - -0.6
3,395,517 - Dsui_3167 0.12 -1.3
3,395,517 - Dsui_3167 0.12 +0.6
3,395,606 - Dsui_3167 0.17 -0.8
3,395,647 + Dsui_3167 0.18 -0.8
3,395,657 + Dsui_3167 0.19 +2.9
3,395,660 - Dsui_3167 0.19 -1.3
3,395,660 - Dsui_3167 0.19 +0.3
3,395,665 - Dsui_3167 0.19 -1.3
3,395,925 - Dsui_3167 0.31 +0.2
3,395,975 - Dsui_3167 0.33 -0.7
3,396,067 + +0.3
3,396,137 + +1.9
3,396,266 - Dsui_3167 0.47 -0.3
3,396,371 + +0.9
3,396,373 - Dsui_3167 0.52 +1.9
3,396,422 - Dsui_3167 0.54 -0.4
3,396,422 - Dsui_3167 0.54 -0.2
3,396,422 - Dsui_3167 0.54 +0.1
3,396,470 - +0.3
3,396,473 + -0.5
3,396,481 - Dsui_3167 0.57 -0.6
3,396,625 + +1.9
3,396,631 + +0.9
3,396,750 + +1.3
3,396,825 - Dsui_3167 0.72 -0.6
3,396,873 - Dsui_3167 0.75 +1.2
3,396,919 - Dsui_3167 0.77 -0.2
3,397,007 - Dsui_3167 0.81 +0.7
3,397,007 - Dsui_3167 0.81 -0.6
3,397,148 - Dsui_3167 0.87 +0.7
3,397,312 - -1.2
3,397,380 - -1.8
3,397,386 - +1.3
3,397,392 + +1.3
3,397,450 - +1.9
3,397,478 - -0.3
3,397,478 - -1.1
3,397,509 + +2.4
3,397,509 + +2.9
3,397,509 + +0.9
3,397,566 + +0.3
3,397,588 + +0.3
3,397,724 - Dsui_3168 0.27 -0.6
3,397,778 - +0.3
3,397,911 - Dsui_3168 0.43 -0.6
3,398,250 - Dsui_3168 0.73 -0.5
3,398,313 - Dsui_3168 0.78 -1.1
3,398,355 - Dsui_3168 0.82 -0.4

Or see this region's nucleotide sequence