Strain Fitness in Dechlorosoma suillum PS around Dsui_3122

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3120 and Dsui_3121 are separated by 12 nucleotidesDsui_3121 and Dsui_3122 are separated by 227 nucleotidesDsui_3122 and Dsui_3123 overlap by 26 nucleotides Dsui_3120: Dsui_3120 - cAMP-binding protein, at 3,342,362 to 3,343,102 _3120 Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849 _3121 Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598 _3122 Dsui_3123: Dsui_3123 - methyl-accepting chemotaxis protein, at 3,344,573 to 3,345,868 _3123 Position (kb) 3344 3345Strain fitness (log2 ratio) -1 0 1 2 3at 3343.088 kb on - strandat 3343.090 kb on + strandat 3343.104 kb on - strandat 3343.174 kb on - strandat 3343.314 kb on + strand, within Dsui_3121at 3343.320 kb on - strand, within Dsui_3121at 3343.597 kb on + strand, within Dsui_3121at 3343.814 kb on + strandat 3343.942 kb on - strandat 3344.024 kb on - strandat 3344.090 kb on - strandat 3344.115 kb on + strandat 3344.294 kb on + strand, within Dsui_3122at 3344.294 kb on + strand, within Dsui_3122at 3344.427 kb on + strand, within Dsui_3122at 3344.432 kb on + strand, within Dsui_3122at 3344.446 kb on - strandat 3344.537 kb on - strand, within Dsui_3122at 3344.561 kb on - strandat 3344.566 kb on - strandat 3344.578 kb on - strandat 3344.733 kb on + strand, within Dsui_3123at 3344.765 kb on + strand, within Dsui_3123at 3344.773 kb on - strand, within Dsui_3123at 3344.945 kb on - strand, within Dsui_3123at 3345.256 kb on - strand, within Dsui_3123at 3345.377 kb on + strand, within Dsui_3123at 3345.428 kb on + strand, within Dsui_3123at 3345.459 kb on - strand, within Dsui_3123at 3345.596 kb on - strand, within Dsui_3123

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,343,088 - -0.6
3,343,090 + -0.1
3,343,104 - -0.4
3,343,174 - -0.7
3,343,314 + Dsui_3121 0.27 -0.4
3,343,320 - Dsui_3121 0.28 +0.2
3,343,597 + Dsui_3121 0.66 -0.2
3,343,814 + -0.4
3,343,942 - +3.5
3,344,024 - -0.9
3,344,090 - +2.9
3,344,115 + -0.3
3,344,294 + Dsui_3122 0.42 +0.1
3,344,294 + Dsui_3122 0.42 -0.3
3,344,427 + Dsui_3122 0.67 -0.5
3,344,432 + Dsui_3122 0.68 -0.4
3,344,446 - +1.9
3,344,537 - Dsui_3122 0.88 -0.7
3,344,561 - +0.3
3,344,566 - +0.3
3,344,578 - +0.2
3,344,733 + Dsui_3123 0.12 +0.1
3,344,765 + Dsui_3123 0.15 +0.3
3,344,773 - Dsui_3123 0.15 +1.3
3,344,945 - Dsui_3123 0.29 -0.5
3,345,256 - Dsui_3123 0.53 -0.6
3,345,377 + Dsui_3123 0.62 +0.1
3,345,428 + Dsui_3123 0.66 +0.5
3,345,459 - Dsui_3123 0.68 -0.4
3,345,596 - Dsui_3123 0.79 +0.6

Or see this region's nucleotide sequence