Strain Fitness in Dechlorosoma suillum PS around Dsui_3118

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3116 and Dsui_3117 are separated by 9 nucleotidesDsui_3117 and Dsui_3118 are separated by 22 nucleotidesDsui_3118 and Dsui_3119 are separated by 92 nucleotides Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960 _3116 Dsui_3117: Dsui_3117 - hypothetical protein, at 3,338,970 to 3,339,374 _3117 Dsui_3118: Dsui_3118 - polyferredoxin, at 3,339,397 to 3,340,389 _3118 Dsui_3119: Dsui_3119 - nitric oxide reductase activation protein, at 3,340,482 to 3,342,329 _3119 Position (kb) 3339 3340 3341Strain fitness (log2 ratio) -2 -1 0 1 2at 3338.469 kb on - strandat 3338.760 kb on + strandat 3338.975 kb on - strandat 3338.975 kb on - strandat 3339.046 kb on - strand, within Dsui_3117at 3339.066 kb on + strand, within Dsui_3117at 3339.066 kb on + strand, within Dsui_3117at 3339.081 kb on + strand, within Dsui_3117at 3339.184 kb on + strand, within Dsui_3117at 3339.352 kb on + strandat 3339.491 kb on + strandat 3339.597 kb on + strand, within Dsui_3118at 3339.605 kb on - strandat 3339.654 kb on + strand, within Dsui_3118at 3339.746 kb on + strandat 3339.944 kb on + strand, within Dsui_3118at 3339.951 kb on + strand, within Dsui_3118at 3340.107 kb on - strandat 3340.125 kb on + strandat 3340.200 kb on + strand, within Dsui_3118at 3340.223 kb on - strandat 3340.334 kb on + strandat 3340.444 kb on + strandat 3340.716 kb on + strandat 3341.113 kb on + strandat 3341.196 kb on + strandat 3341.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,338,469 - -0.7
3,338,760 + -0.7
3,338,975 - -0.5
3,338,975 - +0.3
3,339,046 - Dsui_3117 0.19 -1.8
3,339,066 + Dsui_3117 0.24 -1.6
3,339,066 + Dsui_3117 0.24 -0.8
3,339,081 + Dsui_3117 0.27 -0.2
3,339,184 + Dsui_3117 0.53 +0.2
3,339,352 + -2.1
3,339,491 + -0.5
3,339,597 + Dsui_3118 0.20 -0.5
3,339,605 - +1.9
3,339,654 + Dsui_3118 0.26 -0.8
3,339,746 + +0.3
3,339,944 + Dsui_3118 0.55 -1.1
3,339,951 + Dsui_3118 0.56 -0.4
3,340,107 - +0.3
3,340,125 + +0.3
3,340,200 + Dsui_3118 0.81 -0.4
3,340,223 - +1.9
3,340,334 + +0.1
3,340,444 + -1.5
3,340,716 + +0.3
3,341,113 + -0.1
3,341,196 + +0.9
3,341,233 + +0.9

Or see this region's nucleotide sequence