Strain Fitness in Dechlorosoma suillum PS around Dsui_2752

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2751 and Dsui_2752 are separated by 300 nucleotidesDsui_2752 and Dsui_2753 are separated by 5 nucleotidesDsui_2753 and Dsui_2754 are separated by 262 nucleotides Dsui_2751: Dsui_2751 - cyanophycin synthetase, at 2,908,277 to 2,910,445 _2751 Dsui_2752: Dsui_2752 - ABC-type multidrug transport system, ATPase and permease component, at 2,910,746 to 2,912,953 _2752 Dsui_2753: Dsui_2753 - protein of unknown function (DUF1854), at 2,912,959 to 2,913,429 _2753 Dsui_2754: Dsui_2754 - collagenase-like protease, at 2,913,692 to 2,915,578 _2754 Position (kb) 2910 2911 2912 2913Strain fitness (log2 ratio) -1 0 1 2at 2909.886 kb on + strandat 2909.953 kb on + strandat 2910.063 kb on - strand, within Dsui_2751at 2910.098 kb on - strand, within Dsui_2751at 2910.183 kb on - strand, within Dsui_2751at 2910.258 kb on - strandat 2910.286 kb on + strandat 2910.294 kb on - strandat 2910.392 kb on - strandat 2910.392 kb on - strandat 2910.407 kb on - strandat 2910.414 kb on - strandat 2910.448 kb on - strandat 2910.449 kb on - strandat 2910.488 kb on - strandat 2910.488 kb on - strandat 2910.488 kb on - strandat 2910.488 kb on - strandat 2910.547 kb on + strandat 2910.555 kb on - strandat 2910.555 kb on - strandat 2910.555 kb on - strandat 2910.573 kb on + strandat 2910.581 kb on - strandat 2910.589 kb on + strandat 2910.589 kb on + strandat 2910.597 kb on - strandat 2910.651 kb on + strandat 2910.651 kb on + strandat 2911.316 kb on + strand, within Dsui_2752at 2911.414 kb on + strand, within Dsui_2752at 2912.050 kb on + strand, within Dsui_2752at 2912.164 kb on + strand, within Dsui_2752at 2912.382 kb on + strand, within Dsui_2752at 2912.382 kb on + strand, within Dsui_2752at 2912.890 kb on + strandat 2912.890 kb on + strandat 2913.583 kb on + strandat 2913.583 kb on + strandat 2913.617 kb on - strandat 2913.622 kb on - strandat 2913.644 kb on + strandat 2913.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,909,886 + +0.6
2,909,953 + -0.1
2,910,063 - Dsui_2751 0.82 -0.3
2,910,098 - Dsui_2751 0.84 -0.2
2,910,183 - Dsui_2751 0.88 +0.3
2,910,258 - -0.2
2,910,286 + -0.1
2,910,294 - -0.7
2,910,392 - +0.1
2,910,392 - +0.4
2,910,407 - -0.3
2,910,414 - -0.4
2,910,448 - +0.3
2,910,449 - -0.1
2,910,488 - -0.6
2,910,488 - +0.2
2,910,488 - -0.2
2,910,488 - -0.4
2,910,547 + +0.2
2,910,555 - -0.2
2,910,555 - -0.2
2,910,555 - +1.0
2,910,573 + -0.9
2,910,581 - +0.3
2,910,589 + -0.0
2,910,589 + -0.3
2,910,597 - -0.2
2,910,651 + +1.1
2,910,651 + -0.9
2,911,316 + Dsui_2752 0.26 -1.4
2,911,414 + Dsui_2752 0.30 -0.4
2,912,050 + Dsui_2752 0.59 -1.7
2,912,164 + Dsui_2752 0.64 +0.1
2,912,382 + Dsui_2752 0.74 +0.9
2,912,382 + Dsui_2752 0.74 +2.3
2,912,890 + -0.3
2,912,890 + +0.3
2,913,583 + -0.8
2,913,583 + +0.0
2,913,617 - +0.8
2,913,622 - -0.5
2,913,644 + +0.3
2,913,662 - -0.1

Or see this region's nucleotide sequence