Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2633 and Dsui_2634 are separated by 674 nucleotides Dsui_2634 and Dsui_2635 overlap by 4 nucleotides
Dsui_2633: Dsui_2633 - hypothetical protein, at 2,783,766 to 2,784,023
_2633
Dsui_2634: Dsui_2634 - cytochrome c, mono- and diheme variants family, at 2,784,698 to 2,785,084
_2634
Dsui_2635: Dsui_2635 - heavy metal efflux pump, cobalt-zinc-cadmium, at 2,785,081 to 2,788,215
_2635
Position (kb)
2784
2785
2786 Strain fitness (log2 ratio)
-2
-1
0
1 at 2783.705 kb on + strand at 2783.705 kb on + strand at 2783.708 kb on - strand at 2783.852 kb on - strand, within Dsui_2633 at 2783.872 kb on + strand, within Dsui_2633 at 2783.904 kb on + strand, within Dsui_2633 at 2783.967 kb on + strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.976 kb on - strand, within Dsui_2633 at 2783.987 kb on + strand, within Dsui_2633 at 2784.000 kb on + strand at 2784.055 kb on - strand at 2784.071 kb on + strand at 2784.084 kb on - strand at 2784.092 kb on + strand at 2784.100 kb on - strand at 2784.100 kb on - strand at 2784.144 kb on + strand at 2784.157 kb on - strand at 2784.159 kb on + strand at 2784.159 kb on + strand at 2784.215 kb on - strand at 2784.217 kb on - strand at 2784.359 kb on + strand at 2784.472 kb on - strand at 2784.509 kb on - strand at 2784.553 kb on - strand at 2784.711 kb on + strand at 2785.004 kb on + strand, within Dsui_2634 at 2785.010 kb on + strand, within Dsui_2634 at 2785.029 kb on - strand, within Dsui_2634 at 2785.029 kb on - strand, within Dsui_2634 at 2785.217 kb on - strand at 2785.320 kb on + strand at 2785.473 kb on + strand, within Dsui_2635 at 2785.474 kb on - strand, within Dsui_2635 at 2785.547 kb on - strand, within Dsui_2635 at 2785.588 kb on + strand, within Dsui_2635 at 2785.773 kb on - strand, within Dsui_2635 at 2785.773 kb on - strand, within Dsui_2635 at 2785.881 kb on + strand, within Dsui_2635 at 2785.984 kb on + strand, within Dsui_2635 at 2786.046 kb on - strand, within Dsui_2635
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,783,705 + -1.0 2,783,705 + -0.1 2,783,708 - -0.3 2,783,852 - Dsui_2633 0.33 +0.9 2,783,872 + Dsui_2633 0.41 -1.5 2,783,904 + Dsui_2633 0.53 +0.8 2,783,967 + Dsui_2633 0.78 +0.1 2,783,975 - Dsui_2633 0.81 -0.8 2,783,975 - Dsui_2633 0.81 -0.5 2,783,976 - Dsui_2633 0.81 -0.1 2,783,987 + Dsui_2633 0.86 -0.4 2,784,000 + +0.1 2,784,055 - -0.2 2,784,071 + -0.3 2,784,084 - +0.6 2,784,092 + +0.0 2,784,100 - +0.3 2,784,100 - -0.0 2,784,144 + +0.9 2,784,157 - +0.5 2,784,159 + +0.1 2,784,159 + +0.2 2,784,215 - +0.5 2,784,217 - +0.7 2,784,359 + -0.9 2,784,472 - -0.2 2,784,509 - -0.1 2,784,553 - +0.1 2,784,711 + +0.3 2,785,004 + Dsui_2634 0.79 +0.5 2,785,010 + Dsui_2634 0.81 +0.1 2,785,029 - Dsui_2634 0.86 +0.2 2,785,029 - Dsui_2634 0.86 +0.3 2,785,217 - +0.2 2,785,320 + -1.8 2,785,473 + Dsui_2635 0.13 -0.4 2,785,474 - Dsui_2635 0.13 -0.5 2,785,547 - Dsui_2635 0.15 -0.4 2,785,588 + Dsui_2635 0.16 -0.6 2,785,773 - Dsui_2635 0.22 +0.1 2,785,773 - Dsui_2635 0.22 +1.0 2,785,881 + Dsui_2635 0.26 +0.4 2,785,984 + Dsui_2635 0.29 -1.2 2,786,046 - Dsui_2635 0.31 +0.4
Or see this region's nucleotide sequence