Strain Fitness in Dechlorosoma suillum PS around Dsui_2623

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2622 and Dsui_2623 are separated by 140 nucleotidesDsui_2623 and Dsui_2625 are separated by 674 nucleotides Dsui_2622: Dsui_2622 - uncharacterized protein involved in exopolysaccharide biosynthesis, at 2,775,064 to 2,776,170 _2622 Dsui_2623: Dsui_2623 - site-specific recombinase XerD, at 2,776,311 to 2,777,489 _2623 Dsui_2625: Dsui_2625 - hypothetical protein, at 2,778,164 to 2,778,934 _2625 Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -2 -1 0 1 2at 2775.380 kb on - strand, within Dsui_2622at 2775.408 kb on - strand, within Dsui_2622at 2775.452 kb on + strand, within Dsui_2622at 2775.460 kb on - strand, within Dsui_2622at 2775.460 kb on - strand, within Dsui_2622at 2775.487 kb on - strand, within Dsui_2622at 2775.561 kb on + strand, within Dsui_2622at 2775.666 kb on - strand, within Dsui_2622at 2775.679 kb on + strand, within Dsui_2622at 2775.681 kb on + strand, within Dsui_2622at 2775.687 kb on - strand, within Dsui_2622at 2775.702 kb on + strand, within Dsui_2622at 2775.707 kb on + strand, within Dsui_2622at 2775.719 kb on + strand, within Dsui_2622at 2775.719 kb on + strand, within Dsui_2622at 2775.719 kb on + strand, within Dsui_2622at 2775.719 kb on + strand, within Dsui_2622at 2775.725 kb on - strand, within Dsui_2622at 2775.808 kb on + strand, within Dsui_2622at 2775.808 kb on + strand, within Dsui_2622at 2775.811 kb on - strand, within Dsui_2622at 2775.821 kb on + strandat 2775.829 kb on - strand, within Dsui_2622at 2775.829 kb on - strand, within Dsui_2622at 2775.833 kb on + strand, within Dsui_2622at 2775.841 kb on - strand, within Dsui_2622at 2775.875 kb on + strand, within Dsui_2622at 2775.875 kb on + strand, within Dsui_2622at 2775.875 kb on + strand, within Dsui_2622at 2775.883 kb on - strand, within Dsui_2622at 2775.883 kb on - strand, within Dsui_2622at 2775.973 kb on + strand, within Dsui_2622at 2775.973 kb on + strandat 2775.981 kb on - strand, within Dsui_2622at 2775.981 kb on - strand, within Dsui_2622at 2775.991 kb on - strand, within Dsui_2622at 2776.010 kb on - strand, within Dsui_2622at 2776.016 kb on - strand, within Dsui_2622at 2776.032 kb on + strand, within Dsui_2622at 2776.035 kb on - strand, within Dsui_2622at 2776.035 kb on - strand, within Dsui_2622at 2776.037 kb on + strand, within Dsui_2622at 2776.042 kb on + strand, within Dsui_2622at 2776.044 kb on + strand, within Dsui_2622at 2776.051 kb on + strand, within Dsui_2622at 2776.052 kb on - strand, within Dsui_2622at 2776.056 kb on + strand, within Dsui_2622at 2776.059 kb on - strand, within Dsui_2622at 2776.059 kb on - strand, within Dsui_2622at 2776.063 kb on - strandat 2776.064 kb on - strandat 2776.064 kb on - strandat 2776.086 kb on + strandat 2776.088 kb on + strandat 2776.095 kb on - strandat 2776.099 kb on + strandat 2776.105 kb on + strandat 2776.105 kb on + strandat 2776.105 kb on + strandat 2776.105 kb on + strandat 2776.105 kb on + strandat 2776.113 kb on - strandat 2776.113 kb on - strandat 2776.113 kb on - strandat 2776.113 kb on - strandat 2776.126 kb on - strandat 2776.133 kb on + strandat 2776.134 kb on + strandat 2776.136 kb on + strandat 2776.142 kb on - strandat 2776.144 kb on - strandat 2776.144 kb on - strandat 2776.153 kb on - strandat 2776.156 kb on + strandat 2776.156 kb on + strandat 2776.156 kb on + strandat 2776.164 kb on - strandat 2776.164 kb on - strandat 2776.178 kb on - strandat 2776.191 kb on - strandat 2776.194 kb on + strandat 2776.195 kb on - strandat 2776.202 kb on - strandat 2776.251 kb on + strandat 2776.251 kb on + strandat 2776.271 kb on + strandat 2776.273 kb on - strandat 2776.278 kb on + strandat 2776.279 kb on - strandat 2776.286 kb on - strandat 2776.293 kb on - strandat 2776.293 kb on - strandat 2776.334 kb on + strandat 2776.334 kb on + strandat 2776.344 kb on + strandat 2776.355 kb on + strandat 2776.367 kb on + strandat 2776.383 kb on + strandat 2776.383 kb on + strandat 2776.426 kb on + strandat 2776.461 kb on - strand, within Dsui_2623at 2776.499 kb on + strand, within Dsui_2623at 2776.507 kb on - strand, within Dsui_2623at 2776.528 kb on - strand, within Dsui_2623at 2776.533 kb on - strand, within Dsui_2623at 2776.548 kb on + strand, within Dsui_2623at 2776.550 kb on + strand, within Dsui_2623at 2776.556 kb on - strand, within Dsui_2623at 2776.556 kb on - strand, within Dsui_2623at 2776.556 kb on - strand, within Dsui_2623at 2776.557 kb on + strand, within Dsui_2623at 2776.560 kb on - strand, within Dsui_2623at 2776.595 kb on - strand, within Dsui_2623at 2776.702 kb on + strand, within Dsui_2623at 2776.702 kb on + strand, within Dsui_2623at 2776.702 kb on + strand, within Dsui_2623at 2776.776 kb on + strand, within Dsui_2623at 2776.776 kb on + strand, within Dsui_2623at 2776.784 kb on - strand, within Dsui_2623at 2776.784 kb on - strand, within Dsui_2623at 2776.784 kb on - strand, within Dsui_2623at 2776.811 kb on - strand, within Dsui_2623at 2776.831 kb on + strand, within Dsui_2623at 2776.837 kb on + strand, within Dsui_2623at 2776.837 kb on + strand, within Dsui_2623at 2776.839 kb on - strand, within Dsui_2623at 2776.845 kb on - strand, within Dsui_2623at 2776.845 kb on - strand, within Dsui_2623at 2776.845 kb on - strand, within Dsui_2623at 2776.929 kb on + strand, within Dsui_2623at 2776.940 kb on + strand, within Dsui_2623at 2776.940 kb on + strand, within Dsui_2623at 2776.940 kb on + strand, within Dsui_2623at 2776.940 kb on + strand, within Dsui_2623at 2776.940 kb on + strand, within Dsui_2623at 2776.948 kb on - strand, within Dsui_2623at 2776.948 kb on - strand, within Dsui_2623at 2777.020 kb on + strand, within Dsui_2623at 2777.027 kb on - strand, within Dsui_2623at 2777.075 kb on - strand, within Dsui_2623at 2777.095 kb on + strand, within Dsui_2623at 2777.103 kb on - strand, within Dsui_2623at 2777.121 kb on + strand, within Dsui_2623at 2777.125 kb on - strand, within Dsui_2623at 2777.140 kb on + strand, within Dsui_2623at 2777.140 kb on + strand, within Dsui_2623at 2777.146 kb on + strand, within Dsui_2623at 2777.149 kb on - strand, within Dsui_2623at 2777.149 kb on - strand, within Dsui_2623at 2777.161 kb on + strand, within Dsui_2623at 2777.196 kb on + strand, within Dsui_2623at 2777.204 kb on - strand, within Dsui_2623at 2777.209 kb on - strand, within Dsui_2623at 2777.245 kb on + strand, within Dsui_2623at 2777.247 kb on + strand, within Dsui_2623at 2777.331 kb on - strand, within Dsui_2623at 2777.379 kb on + strandat 2777.419 kb on + strandat 2777.425 kb on + strandat 2777.484 kb on - strandat 2777.600 kb on - strandat 2777.632 kb on + strandat 2777.645 kb on + strandat 2777.715 kb on + strandat 2777.715 kb on + strandat 2777.719 kb on - strandat 2777.723 kb on - strandat 2777.725 kb on + strandat 2777.737 kb on + strandat 2777.742 kb on - strandat 2777.763 kb on - strandat 2777.763 kb on - strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.812 kb on - strandat 2777.817 kb on - strandat 2777.817 kb on - strandat 2777.817 kb on - strandat 2777.819 kb on + strandat 2777.819 kb on + strandat 2777.819 kb on + strandat 2777.856 kb on + strandat 2777.857 kb on - strandat 2777.864 kb on - strandat 2777.864 kb on - strandat 2777.891 kb on - strandat 2777.893 kb on - strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.916 kb on + strandat 2777.919 kb on - strandat 2777.954 kb on - strandat 2777.965 kb on + strandat 2777.965 kb on + strandat 2778.008 kb on - strandat 2778.009 kb on - strandat 2778.009 kb on - strandat 2778.011 kb on + strandat 2778.011 kb on + strandat 2778.011 kb on + strandat 2778.071 kb on + strandat 2778.079 kb on + strandat 2778.079 kb on + strandat 2778.079 kb on + strandat 2778.086 kb on - strandat 2778.087 kb on - strandat 2778.092 kb on + strandat 2778.130 kb on - strandat 2778.174 kb on - strandat 2778.179 kb on + strandat 2778.184 kb on + strandat 2778.184 kb on + strandat 2778.184 kb on + strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.219 kb on - strandat 2778.242 kb on - strand, within Dsui_2625at 2778.247 kb on + strand, within Dsui_2625at 2778.257 kb on + strand, within Dsui_2625at 2778.265 kb on - strand, within Dsui_2625at 2778.267 kb on + strand, within Dsui_2625at 2778.282 kb on - strand, within Dsui_2625at 2778.329 kb on + strand, within Dsui_2625at 2778.334 kb on - strand, within Dsui_2625at 2778.342 kb on - strand, within Dsui_2625at 2778.343 kb on + strand, within Dsui_2625at 2778.351 kb on - strand, within Dsui_2625at 2778.353 kb on + strand, within Dsui_2625at 2778.356 kb on - strand, within Dsui_2625at 2778.359 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.406 kb on + strand, within Dsui_2625at 2778.406 kb on + strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,775,380 - Dsui_2622 0.29 +0.3
2,775,408 - Dsui_2622 0.31 +0.2
2,775,452 + Dsui_2622 0.35 +0.1
2,775,460 - Dsui_2622 0.36 +0.1
2,775,460 - Dsui_2622 0.36 +0.5
2,775,487 - Dsui_2622 0.38 +0.1
2,775,561 + Dsui_2622 0.45 -0.1
2,775,666 - Dsui_2622 0.54 +0.1
2,775,679 + Dsui_2622 0.56 +0.5
2,775,681 + Dsui_2622 0.56 -0.6
2,775,687 - Dsui_2622 0.56 +0.2
2,775,702 + Dsui_2622 0.58 +0.6
2,775,707 + Dsui_2622 0.58 -0.1
2,775,719 + Dsui_2622 0.59 -1.0
2,775,719 + Dsui_2622 0.59 -0.4
2,775,719 + Dsui_2622 0.59 -0.4
2,775,719 + Dsui_2622 0.59 -0.5
2,775,725 - Dsui_2622 0.60 -0.2
2,775,808 + Dsui_2622 0.67 -0.1
2,775,808 + Dsui_2622 0.67 +1.1
2,775,811 - Dsui_2622 0.67 +0.2
2,775,821 + -0.6
2,775,829 - Dsui_2622 0.69 +0.1
2,775,829 - Dsui_2622 0.69 +0.2
2,775,833 + Dsui_2622 0.69 -0.3
2,775,841 - Dsui_2622 0.70 +0.3
2,775,875 + Dsui_2622 0.73 -0.3
2,775,875 + Dsui_2622 0.73 +1.2
2,775,875 + Dsui_2622 0.73 -0.1
2,775,883 - Dsui_2622 0.74 +0.0
2,775,883 - Dsui_2622 0.74 +0.4
2,775,973 + Dsui_2622 0.82 +0.2
2,775,973 + +0.1
2,775,981 - Dsui_2622 0.83 +0.1
2,775,981 - Dsui_2622 0.83 +0.4
2,775,991 - Dsui_2622 0.84 +0.1
2,776,010 - Dsui_2622 0.85 -0.4
2,776,016 - Dsui_2622 0.86 +0.2
2,776,032 + Dsui_2622 0.87 -0.1
2,776,035 - Dsui_2622 0.88 -0.2
2,776,035 - Dsui_2622 0.88 +0.1
2,776,037 + Dsui_2622 0.88 +0.1
2,776,042 + Dsui_2622 0.88 -0.6
2,776,044 + Dsui_2622 0.89 -0.6
2,776,051 + Dsui_2622 0.89 +0.0
2,776,052 - Dsui_2622 0.89 +0.0
2,776,056 + Dsui_2622 0.90 +0.2
2,776,059 - Dsui_2622 0.90 -0.6
2,776,059 - Dsui_2622 0.90 +0.2
2,776,063 - -0.4
2,776,064 - +0.2
2,776,064 - -0.2
2,776,086 + -0.3
2,776,088 + -0.1
2,776,095 - +0.2
2,776,099 + -0.8
2,776,105 + -0.9
2,776,105 + -1.2
2,776,105 + -1.9
2,776,105 + -2.4
2,776,105 + -1.2
2,776,113 - -0.1
2,776,113 - +0.0
2,776,113 - -0.2
2,776,113 - -0.1
2,776,126 - +0.3
2,776,133 + -0.3
2,776,134 + -0.2
2,776,136 + -0.2
2,776,142 - +0.0
2,776,144 - -0.1
2,776,144 - +0.1
2,776,153 - +0.4
2,776,156 + +0.5
2,776,156 + +0.1
2,776,156 + +1.9
2,776,164 - +0.3
2,776,164 - -0.9
2,776,178 - -0.5
2,776,191 - +0.1
2,776,194 + +0.2
2,776,195 - -0.4
2,776,202 - +0.1
2,776,251 + +0.2
2,776,251 + +0.5
2,776,271 + +0.0
2,776,273 - +0.4
2,776,278 + +0.0
2,776,279 - -0.1
2,776,286 - -0.5
2,776,293 - -0.2
2,776,293 - -1.0
2,776,334 + -0.0
2,776,334 + +0.4
2,776,344 + +0.3
2,776,355 + +0.2
2,776,367 + +0.2
2,776,383 + +0.7
2,776,383 + +0.3
2,776,426 + +0.3
2,776,461 - Dsui_2623 0.13 -0.3
2,776,499 + Dsui_2623 0.16 +0.4
2,776,507 - Dsui_2623 0.17 -0.3
2,776,528 - Dsui_2623 0.18 +0.1
2,776,533 - Dsui_2623 0.19 -0.2
2,776,548 + Dsui_2623 0.20 -0.1
2,776,550 + Dsui_2623 0.20 -0.1
2,776,556 - Dsui_2623 0.21 +0.5
2,776,556 - Dsui_2623 0.21 -0.5
2,776,556 - Dsui_2623 0.21 -0.2
2,776,557 + Dsui_2623 0.21 +0.2
2,776,560 - Dsui_2623 0.21 -0.6
2,776,595 - Dsui_2623 0.24 +0.2
2,776,702 + Dsui_2623 0.33 +0.3
2,776,702 + Dsui_2623 0.33 -0.0
2,776,702 + Dsui_2623 0.33 +0.4
2,776,776 + Dsui_2623 0.39 +0.3
2,776,776 + Dsui_2623 0.39 +0.2
2,776,784 - Dsui_2623 0.40 -0.0
2,776,784 - Dsui_2623 0.40 -0.5
2,776,784 - Dsui_2623 0.40 +1.2
2,776,811 - Dsui_2623 0.42 +0.2
2,776,831 + Dsui_2623 0.44 +0.2
2,776,837 + Dsui_2623 0.45 -0.1
2,776,837 + Dsui_2623 0.45 +0.2
2,776,839 - Dsui_2623 0.45 +0.2
2,776,845 - Dsui_2623 0.45 -0.9
2,776,845 - Dsui_2623 0.45 +0.0
2,776,845 - Dsui_2623 0.45 -0.2
2,776,929 + Dsui_2623 0.52 +0.2
2,776,940 + Dsui_2623 0.53 -0.1
2,776,940 + Dsui_2623 0.53 -0.2
2,776,940 + Dsui_2623 0.53 -0.0
2,776,940 + Dsui_2623 0.53 +0.3
2,776,940 + Dsui_2623 0.53 +0.2
2,776,948 - Dsui_2623 0.54 +0.5
2,776,948 - Dsui_2623 0.54 +0.3
2,777,020 + Dsui_2623 0.60 +0.2
2,777,027 - Dsui_2623 0.61 -0.1
2,777,075 - Dsui_2623 0.65 +0.0
2,777,095 + Dsui_2623 0.66 +0.2
2,777,103 - Dsui_2623 0.67 -0.0
2,777,121 + Dsui_2623 0.69 +0.2
2,777,125 - Dsui_2623 0.69 -0.2
2,777,140 + Dsui_2623 0.70 +0.2
2,777,140 + Dsui_2623 0.70 +0.2
2,777,146 + Dsui_2623 0.71 +0.2
2,777,149 - Dsui_2623 0.71 -0.0
2,777,149 - Dsui_2623 0.71 -0.1
2,777,161 + Dsui_2623 0.72 +0.3
2,777,196 + Dsui_2623 0.75 +0.3
2,777,204 - Dsui_2623 0.76 -0.1
2,777,209 - Dsui_2623 0.76 +0.0
2,777,245 + Dsui_2623 0.79 +0.3
2,777,247 + Dsui_2623 0.79 +0.2
2,777,331 - Dsui_2623 0.87 +0.2
2,777,379 + +0.4
2,777,419 + -0.1
2,777,425 + +0.5
2,777,484 - -0.6
2,777,600 - -0.0
2,777,632 + +0.2
2,777,645 + -0.1
2,777,715 + +0.2
2,777,715 + +0.1
2,777,719 - -0.0
2,777,723 - +0.2
2,777,725 + -0.0
2,777,737 + -0.1
2,777,742 - +0.2
2,777,763 - +0.4
2,777,763 - +0.1
2,777,809 + -0.1
2,777,809 + +0.3
2,777,809 + -0.2
2,777,809 + +0.1
2,777,809 + +0.2
2,777,809 + +0.2
2,777,812 - +0.3
2,777,817 - +0.4
2,777,817 - -0.5
2,777,817 - +0.5
2,777,819 + +0.2
2,777,819 + -0.6
2,777,819 + +0.1
2,777,856 + +0.1
2,777,857 - -0.2
2,777,864 - +0.3
2,777,864 - +0.3
2,777,891 - +0.2
2,777,893 - -0.5
2,777,911 + -0.1
2,777,911 + +0.1
2,777,911 + +0.0
2,777,911 + +0.2
2,777,911 + +0.2
2,777,911 + +0.3
2,777,911 + +0.1
2,777,911 + +0.2
2,777,911 + +0.0
2,777,916 + -0.3
2,777,919 - +0.1
2,777,954 - +0.3
2,777,965 + -0.6
2,777,965 + -0.2
2,778,008 - +0.1
2,778,009 - +0.2
2,778,009 - +0.1
2,778,011 + -0.4
2,778,011 + +0.5
2,778,011 + -0.2
2,778,071 + -0.5
2,778,079 + -0.1
2,778,079 + -0.3
2,778,079 + +0.2
2,778,086 - +0.1
2,778,087 - +0.4
2,778,092 + +0.2
2,778,130 - +0.4
2,778,174 - -0.3
2,778,179 + +0.0
2,778,184 + -0.2
2,778,184 + +0.8
2,778,184 + +0.1
2,778,192 - +0.9
2,778,192 - -0.1
2,778,192 - +0.0
2,778,192 - -0.1
2,778,192 - +0.0
2,778,219 - +0.1
2,778,242 - Dsui_2625 0.10 +0.2
2,778,247 + Dsui_2625 0.11 -0.2
2,778,257 + Dsui_2625 0.12 +0.4
2,778,265 - Dsui_2625 0.13 -0.1
2,778,267 + Dsui_2625 0.13 +0.1
2,778,282 - Dsui_2625 0.15 +0.2
2,778,329 + Dsui_2625 0.21 -0.5
2,778,334 - Dsui_2625 0.22 +0.2
2,778,342 - Dsui_2625 0.23 +0.2
2,778,343 + Dsui_2625 0.23 -0.7
2,778,351 - Dsui_2625 0.24 -0.0
2,778,353 + Dsui_2625 0.25 +0.2
2,778,356 - Dsui_2625 0.25 +0.2
2,778,359 + Dsui_2625 0.25 +0.1
2,778,378 + Dsui_2625 0.28 +0.3
2,778,378 + Dsui_2625 0.28 +0.5
2,778,378 + Dsui_2625 0.28 -0.0
2,778,386 - Dsui_2625 0.29 +0.0
2,778,386 - Dsui_2625 0.29 +0.9
2,778,386 - Dsui_2625 0.29 +0.2
2,778,406 + Dsui_2625 0.31 +0.4
2,778,406 + Dsui_2625 0.31 +0.2
2,778,414 - Dsui_2625 0.32 +0.4
2,778,414 - Dsui_2625 0.32 +0.2
2,778,414 - Dsui_2625 0.32 +0.1

Or see this region's nucleotide sequence