Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2425 and Dsui_2426 are separated by 184 nucleotides Dsui_2426 and Dsui_2427 are separated by 15 nucleotides Dsui_2427 and Dsui_2428 are separated by 185 nucleotides Dsui_2428 and Dsui_2429 overlap by 4 nucleotides
Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865
_2425
Dsui_2426: Dsui_2426 - hypothetical protein, at 2,586,050 to 2,586,832
_2426
Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921
_2427
Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583
_2428
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Position (kb)
2586
2587
2588 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2585.877 kb on + strand at 2585.877 kb on + strand at 2585.885 kb on - strand at 2585.885 kb on - strand at 2585.897 kb on - strand at 2585.968 kb on - strand at 2585.983 kb on + strand at 2586.032 kb on + strand at 2586.098 kb on - strand at 2586.127 kb on + strand at 2586.231 kb on + strand, within Dsui_2426 at 2586.277 kb on + strand, within Dsui_2426 at 2586.279 kb on - strand, within Dsui_2426 at 2586.280 kb on - strand, within Dsui_2426 at 2586.301 kb on - strand, within Dsui_2426 at 2586.321 kb on + strand, within Dsui_2426 at 2586.329 kb on - strand, within Dsui_2426 at 2586.361 kb on + strand, within Dsui_2426 at 2586.369 kb on + strand at 2586.369 kb on + strand at 2586.377 kb on - strand, within Dsui_2426 at 2586.396 kb on + strand, within Dsui_2426 at 2586.510 kb on - strand, within Dsui_2426 at 2586.544 kb on - strand at 2586.602 kb on - strand, within Dsui_2426 at 2586.629 kb on + strand at 2586.629 kb on + strand, within Dsui_2426 at 2586.951 kb on - strand at 2587.016 kb on - strand, within Dsui_2427 at 2587.021 kb on - strand, within Dsui_2427 at 2587.047 kb on + strand, within Dsui_2427 at 2587.068 kb on - strand, within Dsui_2427 at 2587.292 kb on + strand, within Dsui_2427 at 2587.294 kb on - strand, within Dsui_2427 at 2587.317 kb on + strand, within Dsui_2427 at 2587.367 kb on - strand, within Dsui_2427 at 2587.500 kb on - strand, within Dsui_2427 at 2587.511 kb on - strand, within Dsui_2427 at 2587.555 kb on + strand, within Dsui_2427 at 2587.600 kb on + strand at 2587.608 kb on - strand, within Dsui_2427 at 2587.652 kb on + strand, within Dsui_2427 at 2587.656 kb on - strand, within Dsui_2427 at 2587.696 kb on + strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.739 kb on - strand, within Dsui_2427 at 2587.787 kb on - strand, within Dsui_2427 at 2587.857 kb on - strand at 2587.916 kb on - strand at 2588.223 kb on + strand, within Dsui_2428 at 2588.287 kb on - strand at 2588.332 kb on + strand, within Dsui_2428 at 2588.401 kb on + strand, within Dsui_2428 at 2588.540 kb on + strand at 2588.543 kb on - strand at 2588.610 kb on - strand at 2588.662 kb on + strand at 2588.667 kb on + strand at 2588.678 kb on - strand at 2588.695 kb on + strand, within Dsui_2429 at 2588.739 kb on + strand, within Dsui_2429
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,585,877 + +0.4 2,585,877 + +1.4 2,585,885 - -0.0 2,585,885 - -0.1 2,585,897 - +0.8 2,585,968 - +0.5 2,585,983 + +0.4 2,586,032 + -0.7 2,586,098 - +0.8 2,586,127 + +0.2 2,586,231 + Dsui_2426 0.23 +0.2 2,586,277 + Dsui_2426 0.29 +0.3 2,586,279 - Dsui_2426 0.29 -0.4 2,586,280 - Dsui_2426 0.29 +1.0 2,586,301 - Dsui_2426 0.32 -1.3 2,586,321 + Dsui_2426 0.35 -1.8 2,586,329 - Dsui_2426 0.36 +0.4 2,586,361 + Dsui_2426 0.40 -1.2 2,586,369 + +1.0 2,586,369 + +1.0 2,586,377 - Dsui_2426 0.42 +0.4 2,586,396 + Dsui_2426 0.44 -0.9 2,586,510 - Dsui_2426 0.59 -1.1 2,586,544 - +1.4 2,586,602 - Dsui_2426 0.70 +0.8 2,586,629 + +1.0 2,586,629 + Dsui_2426 0.74 -1.6 2,586,951 - -0.2 2,587,016 - Dsui_2427 0.16 +0.3 2,587,021 - Dsui_2427 0.16 -0.3 2,587,047 + Dsui_2427 0.19 -1.2 2,587,068 - Dsui_2427 0.20 -0.8 2,587,292 + Dsui_2427 0.41 -2.5 2,587,294 - Dsui_2427 0.42 -1.2 2,587,317 + Dsui_2427 0.44 -0.7 2,587,367 - Dsui_2427 0.48 -0.2 2,587,500 - Dsui_2427 0.61 -0.0 2,587,511 - Dsui_2427 0.62 -1.8 2,587,555 + Dsui_2427 0.66 -0.0 2,587,600 + +0.4 2,587,608 - Dsui_2427 0.71 -0.3 2,587,652 + Dsui_2427 0.75 -0.7 2,587,656 - Dsui_2427 0.75 -0.7 2,587,696 + Dsui_2427 0.79 -1.9 2,587,704 - Dsui_2427 0.80 +0.1 2,587,704 - Dsui_2427 0.80 -1.8 2,587,704 - Dsui_2427 0.80 -0.9 2,587,739 - Dsui_2427 0.83 -0.7 2,587,787 - Dsui_2427 0.87 +0.1 2,587,857 - -0.1 2,587,916 - -0.2 2,588,223 + Dsui_2428 0.24 -0.6 2,588,287 - +1.0 2,588,332 + Dsui_2428 0.47 +1.1 2,588,401 + Dsui_2428 0.62 +1.5 2,588,540 + +2.0 2,588,543 - +2.0 2,588,610 - -0.0 2,588,662 + +0.4 2,588,667 + -1.0 2,588,678 - +1.0 2,588,695 + Dsui_2429 0.10 -0.6 2,588,739 + Dsui_2429 0.14 +1.0
Or see this region's nucleotide sequence