Strain Fitness in Dechlorosoma suillum PS around Dsui_2275

Experiment: Anaero. lactate (C), nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2273 and Dsui_2274 are separated by 201 nucleotidesDsui_2274 and Dsui_2275 overlap by 17 nucleotidesDsui_2275 and Dsui_2276 are separated by 6 nucleotidesDsui_2276 and Dsui_2277 are separated by 210 nucleotides Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691 _2273 Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222 _2274 Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433 _2275 Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991 _2276 Dsui_2277: Dsui_2277 - Rhs element Vgr protein, at 2,428,202 to 2,431,027 _2277 Position (kb) 2427 2428Strain fitness (log2 ratio) -2 -1 0 1 2at 2426.245 kb on + strandat 2426.270 kb on + strandat 2426.342 kb on + strandat 2426.477 kb on - strandat 2426.498 kb on + strandat 2426.545 kb on - strandat 2426.604 kb on - strandat 2426.604 kb on - strandat 2426.679 kb on - strandat 2426.765 kb on - strandat 2426.880 kb on - strandat 2426.893 kb on - strandat 2426.939 kb on - strand, within Dsui_2274at 2427.068 kb on - strandat 2427.247 kb on - strand, within Dsui_2275at 2427.250 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strandat 2427.309 kb on + strandat 2427.309 kb on + strand, within Dsui_2275at 2427.373 kb on + strandat 2427.446 kb on + strandat 2427.449 kb on - strandat 2427.469 kb on + strandat 2427.486 kb on - strandat 2427.793 kb on - strand, within Dsui_2276at 2427.854 kb on + strandat 2427.878 kb on - strand, within Dsui_2276at 2427.896 kb on - strand, within Dsui_2276at 2427.976 kb on + strandat 2427.984 kb on - strandat 2427.997 kb on + strandat 2427.997 kb on + strandat 2428.090 kb on + strandat 2428.090 kb on + strandat 2428.106 kb on - strandat 2428.329 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
remove
2,426,245 + +1.0
2,426,270 + +0.4
2,426,342 + -0.3
2,426,477 - -0.3
2,426,498 + +1.6
2,426,545 - +0.6
2,426,604 - -0.4
2,426,604 - -1.2
2,426,679 - +0.1
2,426,765 - +0.8
2,426,880 - +0.4
2,426,893 - -0.9
2,426,939 - Dsui_2274 0.14 -0.3
2,427,068 - +0.0
2,427,247 - Dsui_2275 0.18 -0.8
2,427,250 + Dsui_2275 0.19 -1.0
2,427,309 + Dsui_2275 0.45 -0.4
2,427,309 + Dsui_2275 0.45 -0.9
2,427,309 + +1.6
2,427,309 + +2.0
2,427,309 + Dsui_2275 0.45 -2.2
2,427,373 + +1.0
2,427,446 + +0.0
2,427,449 - +0.2
2,427,469 + +0.1
2,427,486 - -0.4
2,427,793 - Dsui_2276 0.64 +0.2
2,427,854 + +0.4
2,427,878 - Dsui_2276 0.79 +0.8
2,427,896 - Dsui_2276 0.83 +1.2
2,427,976 + -1.0
2,427,984 - -0.6
2,427,997 + +0.4
2,427,997 + +0.3
2,428,090 + -0.2
2,428,090 + +0.1
2,428,106 - +2.0
2,428,329 + +1.4

Or see this region's nucleotide sequence