Strain Fitness in Dechlorosoma suillum PS around Dsui_2126

Experiment: Anaero. lactate (C), nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2125 and Dsui_2126 are separated by 197 nucleotidesDsui_2126 and Dsui_2127 are separated by 67 nucleotidesDsui_2127 and Dsui_2128 are separated by 143 nucleotides Dsui_2125: Dsui_2125 - PAS domain S-box, at 2,251,301 to 2,254,285 _2125 Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574 _2126 Dsui_2127: Dsui_2127 - flavodoxin reductase family protein, at 2,255,642 to 2,256,430 _2127 Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795 _2128 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2253.560 kb on + strandat 2253.601 kb on - strand, within Dsui_2125at 2253.682 kb on - strand, within Dsui_2125at 2253.690 kb on + strandat 2253.737 kb on - strandat 2253.869 kb on - strand, within Dsui_2125at 2253.869 kb on - strandat 2254.177 kb on + strandat 2254.177 kb on + strandat 2254.222 kb on + strandat 2254.230 kb on - strandat 2254.235 kb on + strandat 2254.336 kb on + strandat 2254.342 kb on - strandat 2254.393 kb on - strandat 2254.422 kb on + strandat 2254.444 kb on + strandat 2254.553 kb on - strandat 2254.675 kb on - strand, within Dsui_2126at 2254.770 kb on - strand, within Dsui_2126at 2255.248 kb on - strand, within Dsui_2126at 2255.255 kb on + strandat 2255.517 kb on + strandat 2255.847 kb on - strandat 2255.990 kb on - strandat 2256.090 kb on - strand, within Dsui_2127at 2256.123 kb on - strandat 2256.128 kb on - strandat 2256.128 kb on - strand, within Dsui_2127at 2256.172 kb on + strand, within Dsui_2127at 2256.440 kb on + strandat 2256.440 kb on + strandat 2256.448 kb on - strandat 2256.448 kb on - strandat 2256.491 kb on + strandat 2256.499 kb on - strandat 2256.571 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
remove
2,253,560 + +1.7
2,253,601 - Dsui_2125 0.77 -0.3
2,253,682 - Dsui_2125 0.80 -0.2
2,253,690 + +1.1
2,253,737 - +0.5
2,253,869 - Dsui_2125 0.86 -1.1
2,253,869 - +0.5
2,254,177 + +1.5
2,254,177 + +2.1
2,254,222 + +0.6
2,254,230 - +0.5
2,254,235 + +1.5
2,254,336 + -0.5
2,254,342 - -0.3
2,254,393 - +0.4
2,254,422 + +0.7
2,254,444 + +2.1
2,254,553 - +0.5
2,254,675 - Dsui_2126 0.18 +0.1
2,254,770 - Dsui_2126 0.26 -2.4
2,255,248 - Dsui_2126 0.70 -0.8
2,255,255 + +3.7
2,255,517 + -1.2
2,255,847 - -0.2
2,255,990 - +1.1
2,256,090 - Dsui_2127 0.57 -0.5
2,256,123 - +0.8
2,256,128 - -0.5
2,256,128 - Dsui_2127 0.62 -0.6
2,256,172 + Dsui_2127 0.67 +2.3
2,256,440 + -0.4
2,256,440 + +1.5
2,256,448 - -0.3
2,256,448 - +0.8
2,256,491 + +0.7
2,256,499 - +3.1
2,256,571 + +0.1

Or see this region's nucleotide sequence