Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1843 and Dsui_1844 are separated by 61 nucleotides Dsui_1844 and Dsui_1845 are separated by 11 nucleotides Dsui_1845 and Dsui_1846 are separated by 101 nucleotides
Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590
_1843
Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305
_1844
Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360
_1845
Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622
_1846
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-1
0
1
2 at 1939.330 kb on + strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.525 kb on + strand, within Dsui_1843 at 1939.625 kb on - strand at 1939.639 kb on + strand at 1939.731 kb on - strand, within Dsui_1844 at 1939.770 kb on + strand, within Dsui_1844 at 1939.778 kb on - strand at 1939.817 kb on + strand, within Dsui_1844 at 1939.997 kb on + strand, within Dsui_1844 at 1940.005 kb on - strand, within Dsui_1844 at 1940.034 kb on + strand, within Dsui_1844 at 1940.068 kb on + strand at 1940.068 kb on + strand, within Dsui_1844 at 1940.076 kb on - strand, within Dsui_1844 at 1940.315 kb on + strand at 1940.348 kb on + strand at 1940.353 kb on + strand at 1940.378 kb on - strand at 1940.394 kb on + strand at 1940.485 kb on - strand, within Dsui_1845 at 1940.664 kb on - strand at 1940.718 kb on + strand at 1940.718 kb on + strand at 1940.897 kb on - strand, within Dsui_1845 at 1940.962 kb on + strand, within Dsui_1845 at 1941.061 kb on + strand at 1941.069 kb on - strand, within Dsui_1845 at 1941.096 kb on - strand, within Dsui_1845 at 1941.189 kb on - strand, within Dsui_1845 at 1941.573 kb on - strand at 1941.606 kb on - strand, within Dsui_1846 at 1941.717 kb on - strand, within Dsui_1846 at 1941.735 kb on - strand, within Dsui_1846 at 1941.769 kb on - strand, within Dsui_1846 at 1941.781 kb on - strand, within Dsui_1846 at 1941.886 kb on + strand at 1941.955 kb on - strand, within Dsui_1846 at 1942.021 kb on - strand, within Dsui_1846 at 1942.044 kb on + strand, within Dsui_1846 at 1942.052 kb on - strand, within Dsui_1846 at 1942.053 kb on - strand, within Dsui_1846 at 1942.131 kb on + strand, within Dsui_1846 at 1942.162 kb on - strand, within Dsui_1846 at 1942.309 kb on - strand, within Dsui_1846 at 1942.336 kb on + strand, within Dsui_1846
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,939,330 + Dsui_1843 0.37 +1.0 1,939,330 + Dsui_1843 0.37 +1.0 1,939,525 + Dsui_1843 0.84 +0.1 1,939,625 - -0.4 1,939,639 + +1.1 1,939,731 - Dsui_1844 0.12 +0.5 1,939,770 + Dsui_1844 0.18 -0.5 1,939,778 - +0.6 1,939,817 + Dsui_1844 0.25 +0.8 1,939,997 + Dsui_1844 0.53 +0.1 1,940,005 - Dsui_1844 0.54 -0.6 1,940,034 + Dsui_1844 0.58 -1.4 1,940,068 + -0.6 1,940,068 + Dsui_1844 0.64 -0.1 1,940,076 - Dsui_1844 0.65 +0.2 1,940,315 + -0.1 1,940,348 + -0.8 1,940,353 + +0.4 1,940,378 - -1.3 1,940,394 + -0.6 1,940,485 - Dsui_1845 0.16 +0.1 1,940,664 - +0.4 1,940,718 + +0.9 1,940,718 + +1.9 1,940,897 - Dsui_1845 0.56 -0.9 1,940,962 + Dsui_1845 0.62 +0.4 1,941,061 + -0.1 1,941,069 - Dsui_1845 0.72 -0.2 1,941,096 - Dsui_1845 0.75 -0.2 1,941,189 - Dsui_1845 0.84 -0.8 1,941,573 - +0.1 1,941,606 - Dsui_1846 0.12 -0.0 1,941,717 - Dsui_1846 0.22 +0.2 1,941,735 - Dsui_1846 0.24 -0.5 1,941,769 - Dsui_1846 0.26 +0.4 1,941,781 - Dsui_1846 0.27 +0.1 1,941,886 + -0.1 1,941,955 - Dsui_1846 0.42 +0.1 1,942,021 - Dsui_1846 0.48 +0.3 1,942,044 + Dsui_1846 0.50 +0.1 1,942,052 - Dsui_1846 0.51 -0.4 1,942,053 - Dsui_1846 0.51 -0.5 1,942,131 + Dsui_1846 0.58 +0.5 1,942,162 - Dsui_1846 0.60 -0.5 1,942,309 - Dsui_1846 0.73 +0.4 1,942,336 + Dsui_1846 0.75 +0.5
Or see this region's nucleotide sequence