Strain Fitness in Dechlorosoma suillum PS around Dsui_1845

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1843 and Dsui_1844 are separated by 61 nucleotidesDsui_1844 and Dsui_1845 are separated by 11 nucleotidesDsui_1845 and Dsui_1846 are separated by 101 nucleotides Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590 _1843 Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305 _1844 Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360 _1845 Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622 _1846 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -1 0 1 2at 1939.330 kb on + strand, within Dsui_1843at 1939.330 kb on + strand, within Dsui_1843at 1939.525 kb on + strand, within Dsui_1843at 1939.625 kb on - strandat 1939.639 kb on + strandat 1939.731 kb on - strand, within Dsui_1844at 1939.770 kb on + strand, within Dsui_1844at 1939.778 kb on - strandat 1939.817 kb on + strand, within Dsui_1844at 1939.997 kb on + strand, within Dsui_1844at 1940.005 kb on - strand, within Dsui_1844at 1940.034 kb on + strand, within Dsui_1844at 1940.068 kb on + strandat 1940.068 kb on + strand, within Dsui_1844at 1940.076 kb on - strand, within Dsui_1844at 1940.315 kb on + strandat 1940.348 kb on + strandat 1940.353 kb on + strandat 1940.378 kb on - strandat 1940.394 kb on + strandat 1940.485 kb on - strand, within Dsui_1845at 1940.664 kb on - strandat 1940.718 kb on + strandat 1940.718 kb on + strandat 1940.897 kb on - strand, within Dsui_1845at 1940.962 kb on + strand, within Dsui_1845at 1941.061 kb on + strandat 1941.069 kb on - strand, within Dsui_1845at 1941.096 kb on - strand, within Dsui_1845at 1941.189 kb on - strand, within Dsui_1845at 1941.573 kb on - strandat 1941.606 kb on - strand, within Dsui_1846at 1941.717 kb on - strand, within Dsui_1846at 1941.735 kb on - strand, within Dsui_1846at 1941.769 kb on - strand, within Dsui_1846at 1941.781 kb on - strand, within Dsui_1846at 1941.886 kb on + strandat 1941.955 kb on - strand, within Dsui_1846at 1942.021 kb on - strand, within Dsui_1846at 1942.044 kb on + strand, within Dsui_1846at 1942.052 kb on - strand, within Dsui_1846at 1942.053 kb on - strand, within Dsui_1846at 1942.131 kb on + strand, within Dsui_1846at 1942.162 kb on - strand, within Dsui_1846at 1942.309 kb on - strand, within Dsui_1846at 1942.336 kb on + strand, within Dsui_1846

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,939,330 + Dsui_1843 0.37 +1.0
1,939,330 + Dsui_1843 0.37 +1.0
1,939,525 + Dsui_1843 0.84 +0.1
1,939,625 - -0.4
1,939,639 + +1.1
1,939,731 - Dsui_1844 0.12 +0.5
1,939,770 + Dsui_1844 0.18 -0.5
1,939,778 - +0.6
1,939,817 + Dsui_1844 0.25 +0.8
1,939,997 + Dsui_1844 0.53 +0.1
1,940,005 - Dsui_1844 0.54 -0.6
1,940,034 + Dsui_1844 0.58 -1.4
1,940,068 + -0.6
1,940,068 + Dsui_1844 0.64 -0.1
1,940,076 - Dsui_1844 0.65 +0.2
1,940,315 + -0.1
1,940,348 + -0.8
1,940,353 + +0.4
1,940,378 - -1.3
1,940,394 + -0.6
1,940,485 - Dsui_1845 0.16 +0.1
1,940,664 - +0.4
1,940,718 + +0.9
1,940,718 + +1.9
1,940,897 - Dsui_1845 0.56 -0.9
1,940,962 + Dsui_1845 0.62 +0.4
1,941,061 + -0.1
1,941,069 - Dsui_1845 0.72 -0.2
1,941,096 - Dsui_1845 0.75 -0.2
1,941,189 - Dsui_1845 0.84 -0.8
1,941,573 - +0.1
1,941,606 - Dsui_1846 0.12 -0.0
1,941,717 - Dsui_1846 0.22 +0.2
1,941,735 - Dsui_1846 0.24 -0.5
1,941,769 - Dsui_1846 0.26 +0.4
1,941,781 - Dsui_1846 0.27 +0.1
1,941,886 + -0.1
1,941,955 - Dsui_1846 0.42 +0.1
1,942,021 - Dsui_1846 0.48 +0.3
1,942,044 + Dsui_1846 0.50 +0.1
1,942,052 - Dsui_1846 0.51 -0.4
1,942,053 - Dsui_1846 0.51 -0.5
1,942,131 + Dsui_1846 0.58 +0.5
1,942,162 - Dsui_1846 0.60 -0.5
1,942,309 - Dsui_1846 0.73 +0.4
1,942,336 + Dsui_1846 0.75 +0.5

Or see this region's nucleotide sequence