Strain Fitness in Dechlorosoma suillum PS around Dsui_1711

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1710 and Dsui_1711 are separated by 72 nucleotidesDsui_1711 and Dsui_1712 overlap by 26 nucleotidesDsui_1712 and Dsui_1713 are separated by 6 nucleotides Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335 _1710 Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286 _1711 Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908 _1712 Dsui_1713: Dsui_1713 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,801,915 to 1,802,940 _1713 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -1 0 1 2 3at 1799.423 kb on + strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.505 kb on + strand, within Dsui_1710at 1799.510 kb on + strand, within Dsui_1710at 1799.526 kb on - strand, within Dsui_1710at 1800.004 kb on + strand, within Dsui_1710at 1800.004 kb on + strand, within Dsui_1710at 1800.012 kb on - strand, within Dsui_1710at 1800.296 kb on - strandat 1800.329 kb on + strandat 1800.413 kb on - strandat 1800.627 kb on - strandat 1800.724 kb on - strandat 1800.734 kb on - strandat 1800.739 kb on + strand, within Dsui_1711at 1800.845 kb on - strand, within Dsui_1711at 1800.959 kb on + strand, within Dsui_1711at 1800.967 kb on - strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1801.007 kb on - strand, within Dsui_1711at 1801.193 kb on - strand, within Dsui_1711at 1801.267 kb on - strandat 1801.395 kb on - strand, within Dsui_1712at 1801.511 kb on - strand, within Dsui_1712at 1801.527 kb on + strand, within Dsui_1712at 1801.611 kb on + strand, within Dsui_1712at 1801.780 kb on - strand, within Dsui_1712at 1801.823 kb on + strand, within Dsui_1712at 1801.861 kb on + strandat 1801.869 kb on - strandat 1801.905 kb on - strandat 1801.917 kb on + strandat 1801.955 kb on + strandat 1802.076 kb on + strand, within Dsui_1713at 1802.110 kb on - strand, within Dsui_1713at 1802.110 kb on - strand, within Dsui_1713at 1802.238 kb on + strand, within Dsui_1713at 1802.278 kb on - strand, within Dsui_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,799,423 + Dsui_1710 0.68 -0.5
1,799,431 - Dsui_1710 0.68 +0.0
1,799,431 - Dsui_1710 0.68 +0.5
1,799,431 - Dsui_1710 0.68 +1.7
1,799,505 + Dsui_1710 0.71 -0.1
1,799,510 + Dsui_1710 0.71 -0.2
1,799,526 - Dsui_1710 0.72 +0.3
1,800,004 + Dsui_1710 0.88 -1.7
1,800,004 + Dsui_1710 0.88 +0.4
1,800,012 - Dsui_1710 0.89 +0.3
1,800,296 - -0.4
1,800,329 + +0.1
1,800,413 - +0.3
1,800,627 - +2.9
1,800,724 - +0.3
1,800,734 - +0.9
1,800,739 + Dsui_1711 0.38 +0.4
1,800,845 - Dsui_1711 0.50 +0.8
1,800,959 + Dsui_1711 0.63 +0.7
1,800,967 - Dsui_1711 0.64 +0.3
1,800,999 + Dsui_1711 0.67 +0.6
1,800,999 + Dsui_1711 0.67 +0.2
1,800,999 + Dsui_1711 0.67 +0.3
1,800,999 + Dsui_1711 0.67 +0.3
1,801,007 - Dsui_1711 0.68 -0.7
1,801,193 - Dsui_1711 0.89 +0.8
1,801,267 - +0.9
1,801,395 - Dsui_1712 0.21 -0.8
1,801,511 - Dsui_1712 0.39 -1.6
1,801,527 + Dsui_1712 0.41 -0.0
1,801,611 + Dsui_1712 0.54 +0.3
1,801,780 - Dsui_1712 0.80 -0.9
1,801,823 + Dsui_1712 0.87 -0.6
1,801,861 + -0.1
1,801,869 - +0.3
1,801,905 - +1.9
1,801,917 + +0.1
1,801,955 + -0.0
1,802,076 + Dsui_1713 0.16 +0.2
1,802,110 - Dsui_1713 0.19 -0.1
1,802,110 - Dsui_1713 0.19 +1.3
1,802,238 + Dsui_1713 0.31 -0.2
1,802,278 - Dsui_1713 0.35 +1.0

Or see this region's nucleotide sequence