Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1710 and Dsui_1711 are separated by 72 nucleotides Dsui_1711 and Dsui_1712 overlap by 26 nucleotides Dsui_1712 and Dsui_1713 are separated by 6 nucleotides
Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335
_1710
Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286
_1711
Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908
_1712
Dsui_1713: Dsui_1713 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,801,915 to 1,802,940
_1713
Position (kb)
1800
1801
1802 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1799.423 kb on + strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.505 kb on + strand, within Dsui_1710 at 1799.510 kb on + strand, within Dsui_1710 at 1799.526 kb on - strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.012 kb on - strand, within Dsui_1710 at 1800.296 kb on - strand at 1800.329 kb on + strand at 1800.413 kb on - strand at 1800.627 kb on - strand at 1800.724 kb on - strand at 1800.734 kb on - strand at 1800.739 kb on + strand, within Dsui_1711 at 1800.845 kb on - strand, within Dsui_1711 at 1800.959 kb on + strand, within Dsui_1711 at 1800.967 kb on - strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1801.007 kb on - strand, within Dsui_1711 at 1801.193 kb on - strand, within Dsui_1711 at 1801.267 kb on - strand at 1801.395 kb on - strand, within Dsui_1712 at 1801.511 kb on - strand, within Dsui_1712 at 1801.527 kb on + strand, within Dsui_1712 at 1801.611 kb on + strand, within Dsui_1712 at 1801.780 kb on - strand, within Dsui_1712 at 1801.823 kb on + strand, within Dsui_1712 at 1801.861 kb on + strand at 1801.869 kb on - strand at 1801.905 kb on - strand at 1801.917 kb on + strand at 1801.955 kb on + strand at 1802.076 kb on + strand, within Dsui_1713 at 1802.110 kb on - strand, within Dsui_1713 at 1802.110 kb on - strand, within Dsui_1713 at 1802.238 kb on + strand, within Dsui_1713 at 1802.278 kb on - strand, within Dsui_1713
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,799,423 + Dsui_1710 0.68 -0.5 1,799,431 - Dsui_1710 0.68 +0.0 1,799,431 - Dsui_1710 0.68 +0.5 1,799,431 - Dsui_1710 0.68 +1.7 1,799,505 + Dsui_1710 0.71 -0.1 1,799,510 + Dsui_1710 0.71 -0.2 1,799,526 - Dsui_1710 0.72 +0.3 1,800,004 + Dsui_1710 0.88 -1.7 1,800,004 + Dsui_1710 0.88 +0.4 1,800,012 - Dsui_1710 0.89 +0.3 1,800,296 - -0.4 1,800,329 + +0.1 1,800,413 - +0.3 1,800,627 - +2.9 1,800,724 - +0.3 1,800,734 - +0.9 1,800,739 + Dsui_1711 0.38 +0.4 1,800,845 - Dsui_1711 0.50 +0.8 1,800,959 + Dsui_1711 0.63 +0.7 1,800,967 - Dsui_1711 0.64 +0.3 1,800,999 + Dsui_1711 0.67 +0.6 1,800,999 + Dsui_1711 0.67 +0.2 1,800,999 + Dsui_1711 0.67 +0.3 1,800,999 + Dsui_1711 0.67 +0.3 1,801,007 - Dsui_1711 0.68 -0.7 1,801,193 - Dsui_1711 0.89 +0.8 1,801,267 - +0.9 1,801,395 - Dsui_1712 0.21 -0.8 1,801,511 - Dsui_1712 0.39 -1.6 1,801,527 + Dsui_1712 0.41 -0.0 1,801,611 + Dsui_1712 0.54 +0.3 1,801,780 - Dsui_1712 0.80 -0.9 1,801,823 + Dsui_1712 0.87 -0.6 1,801,861 + -0.1 1,801,869 - +0.3 1,801,905 - +1.9 1,801,917 + +0.1 1,801,955 + -0.0 1,802,076 + Dsui_1713 0.16 +0.2 1,802,110 - Dsui_1713 0.19 -0.1 1,802,110 - Dsui_1713 0.19 +1.3 1,802,238 + Dsui_1713 0.31 -0.2 1,802,278 - Dsui_1713 0.35 +1.0
Or see this region's nucleotide sequence