Strain Fitness in Dechlorosoma suillum PS around Dsui_1642

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1639 and Dsui_1640 are separated by 124 nucleotidesDsui_1640 and Dsui_1641 overlap by 4 nucleotidesDsui_1641 and Dsui_1642 are separated by 58 nucleotidesDsui_1642 and Dsui_1643 are separated by 15 nucleotides Dsui_1639: Dsui_1639 - putative flavoprotein, at 1,722,224 to 1,722,964 _1639 Dsui_1640: Dsui_1640 - hypothetical protein, at 1,723,089 to 1,723,541 _1640 Dsui_1641: Dsui_1641 - SirA-like protein, at 1,723,538 to 1,723,777 _1641 Dsui_1642: Dsui_1642 - hypothetical protein, at 1,723,836 to 1,725,134 _1642 Dsui_1643: Dsui_1643 - uncharacterized protein involved in response to NO, at 1,725,150 to 1,726,367 _1643 Position (kb) 1723 1724 1725 1726Strain fitness (log2 ratio) -2 -1 0 1 2at 1722.968 kb on - strandat 1722.995 kb on + strandat 1723.174 kb on - strand, within Dsui_1640at 1723.274 kb on + strand, within Dsui_1640at 1723.282 kb on - strand, within Dsui_1640at 1723.307 kb on - strand, within Dsui_1640at 1723.481 kb on - strand, within Dsui_1640at 1723.505 kb on - strandat 1723.534 kb on + strandat 1723.620 kb on + strand, within Dsui_1641at 1723.665 kb on + strand, within Dsui_1641at 1723.687 kb on - strand, within Dsui_1641at 1723.730 kb on + strand, within Dsui_1641at 1723.736 kb on - strand, within Dsui_1641at 1723.743 kb on - strand, within Dsui_1641at 1723.771 kb on + strandat 1723.864 kb on - strandat 1724.011 kb on - strand, within Dsui_1642at 1724.105 kb on + strand, within Dsui_1642at 1724.177 kb on + strand, within Dsui_1642at 1724.177 kb on + strand, within Dsui_1642at 1724.177 kb on + strand, within Dsui_1642at 1724.185 kb on - strandat 1724.195 kb on - strandat 1724.195 kb on - strandat 1724.200 kb on - strandat 1724.269 kb on - strand, within Dsui_1642at 1724.339 kb on + strand, within Dsui_1642at 1724.360 kb on + strand, within Dsui_1642at 1724.394 kb on - strandat 1724.457 kb on + strand, within Dsui_1642at 1724.511 kb on + strand, within Dsui_1642at 1724.680 kb on + strandat 1724.741 kb on - strandat 1724.746 kb on - strand, within Dsui_1642at 1724.767 kb on + strand, within Dsui_1642at 1724.834 kb on + strand, within Dsui_1642at 1724.834 kb on + strand, within Dsui_1642at 1724.841 kb on + strand, within Dsui_1642at 1724.842 kb on - strandat 1724.865 kb on + strand, within Dsui_1642at 1724.873 kb on - strandat 1724.880 kb on + strand, within Dsui_1642at 1725.003 kb on + strand, within Dsui_1642at 1725.054 kb on + strandat 1725.081 kb on - strandat 1725.119 kb on + strandat 1725.204 kb on + strandat 1725.240 kb on + strandat 1725.264 kb on + strandat 1725.281 kb on - strandat 1725.758 kb on + strand, within Dsui_1643at 1725.758 kb on - strandat 1725.849 kb on - strandat 1725.949 kb on + strand, within Dsui_1643at 1725.957 kb on - strand, within Dsui_1643at 1726.000 kb on + strand, within Dsui_1643at 1726.021 kb on - strandat 1726.115 kb on + strand, within Dsui_1643

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,722,968 - -0.1
1,722,995 + -0.2
1,723,174 - Dsui_1640 0.19 -0.6
1,723,274 + Dsui_1640 0.41 -0.9
1,723,282 - Dsui_1640 0.43 -1.1
1,723,307 - Dsui_1640 0.48 -2.5
1,723,481 - Dsui_1640 0.87 -1.6
1,723,505 - -1.5
1,723,534 + +1.0
1,723,620 + Dsui_1641 0.34 -0.0
1,723,665 + Dsui_1641 0.53 -1.5
1,723,687 - Dsui_1641 0.62 -1.6
1,723,730 + Dsui_1641 0.80 -1.1
1,723,736 - Dsui_1641 0.82 -1.2
1,723,743 - Dsui_1641 0.85 -0.5
1,723,771 + +0.5
1,723,864 - -0.9
1,724,011 - Dsui_1642 0.13 -1.6
1,724,105 + Dsui_1642 0.21 -0.1
1,724,177 + Dsui_1642 0.26 -0.8
1,724,177 + Dsui_1642 0.26 -1.3
1,724,177 + Dsui_1642 0.26 -1.1
1,724,185 - +1.9
1,724,195 - +0.9
1,724,195 - +0.3
1,724,200 - +1.9
1,724,269 - Dsui_1642 0.33 +0.1
1,724,339 + Dsui_1642 0.39 -1.6
1,724,360 + Dsui_1642 0.40 -0.7
1,724,394 - +1.9
1,724,457 + Dsui_1642 0.48 -0.8
1,724,511 + Dsui_1642 0.52 -0.5
1,724,680 + -0.7
1,724,741 - +0.3
1,724,746 - Dsui_1642 0.70 -1.3
1,724,767 + Dsui_1642 0.72 -0.8
1,724,834 + Dsui_1642 0.77 -1.8
1,724,834 + Dsui_1642 0.77 -1.1
1,724,841 + Dsui_1642 0.77 -2.1
1,724,842 - -0.5
1,724,865 + Dsui_1642 0.79 -1.9
1,724,873 - +0.9
1,724,880 + Dsui_1642 0.80 +0.4
1,725,003 + Dsui_1642 0.90 -1.2
1,725,054 + -0.7
1,725,081 - -1.1
1,725,119 + -0.5
1,725,204 + +0.3
1,725,240 + -0.3
1,725,264 + -0.5
1,725,281 - +0.5
1,725,758 + Dsui_1643 0.50 -0.5
1,725,758 - +1.9
1,725,849 - +0.9
1,725,949 + Dsui_1643 0.66 +0.1
1,725,957 - Dsui_1643 0.66 +1.1
1,726,000 + Dsui_1643 0.70 -0.5
1,726,021 - +0.3
1,726,115 + Dsui_1643 0.79 -0.5

Or see this region's nucleotide sequence