Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1638 and Dsui_1639 overlap by 1 nucleotides Dsui_1639 and Dsui_1640 are separated by 124 nucleotides Dsui_1640 and Dsui_1641 overlap by 4 nucleotides Dsui_1641 and Dsui_1642 are separated by 58 nucleotides
Dsui_1638: Dsui_1638 - methyl-accepting chemotaxis protein, at 1,721,559 to 1,722,224
_1638
Dsui_1639: Dsui_1639 - putative flavoprotein, at 1,722,224 to 1,722,964
_1639
Dsui_1640: Dsui_1640 - hypothetical protein, at 1,723,089 to 1,723,541
_1640
Dsui_1641: Dsui_1641 - SirA-like protein, at 1,723,538 to 1,723,777
_1641
Dsui_1642: Dsui_1642 - hypothetical protein, at 1,723,836 to 1,725,134
_1642
Position (kb)
1723
1724 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1722.178 kb on + strand at 1722.180 kb on + strand at 1722.362 kb on - strand, within Dsui_1639 at 1722.479 kb on + strand, within Dsui_1639 at 1722.511 kb on + strand, within Dsui_1639 at 1722.601 kb on - strand, within Dsui_1639 at 1722.615 kb on + strand, within Dsui_1639 at 1722.623 kb on - strand, within Dsui_1639 at 1722.743 kb on + strand, within Dsui_1639 at 1722.968 kb on - strand at 1722.995 kb on + strand at 1723.174 kb on - strand, within Dsui_1640 at 1723.274 kb on + strand, within Dsui_1640 at 1723.282 kb on - strand, within Dsui_1640 at 1723.307 kb on - strand, within Dsui_1640 at 1723.481 kb on - strand, within Dsui_1640 at 1723.505 kb on - strand at 1723.534 kb on + strand at 1723.620 kb on + strand, within Dsui_1641 at 1723.665 kb on + strand, within Dsui_1641 at 1723.687 kb on - strand, within Dsui_1641 at 1723.730 kb on + strand, within Dsui_1641 at 1723.736 kb on - strand, within Dsui_1641 at 1723.743 kb on - strand, within Dsui_1641 at 1723.771 kb on + strand at 1723.864 kb on - strand at 1724.011 kb on - strand, within Dsui_1642 at 1724.105 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.185 kb on - strand at 1724.195 kb on - strand at 1724.195 kb on - strand at 1724.200 kb on - strand at 1724.269 kb on - strand, within Dsui_1642 at 1724.339 kb on + strand, within Dsui_1642 at 1724.360 kb on + strand, within Dsui_1642 at 1724.394 kb on - strand at 1724.457 kb on + strand, within Dsui_1642 at 1724.511 kb on + strand, within Dsui_1642
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,722,178 + -0.1 1,722,180 + +0.6 1,722,362 - Dsui_1639 0.19 +0.5 1,722,479 + Dsui_1639 0.34 +0.3 1,722,511 + Dsui_1639 0.39 -0.7 1,722,601 - Dsui_1639 0.51 +1.0 1,722,615 + Dsui_1639 0.53 -0.3 1,722,623 - Dsui_1639 0.54 -0.1 1,722,743 + Dsui_1639 0.70 -0.0 1,722,968 - -0.1 1,722,995 + -0.2 1,723,174 - Dsui_1640 0.19 -0.6 1,723,274 + Dsui_1640 0.41 -0.9 1,723,282 - Dsui_1640 0.43 -1.1 1,723,307 - Dsui_1640 0.48 -2.5 1,723,481 - Dsui_1640 0.87 -1.6 1,723,505 - -1.5 1,723,534 + +1.0 1,723,620 + Dsui_1641 0.34 -0.0 1,723,665 + Dsui_1641 0.53 -1.5 1,723,687 - Dsui_1641 0.62 -1.6 1,723,730 + Dsui_1641 0.80 -1.1 1,723,736 - Dsui_1641 0.82 -1.2 1,723,743 - Dsui_1641 0.85 -0.5 1,723,771 + +0.5 1,723,864 - -0.9 1,724,011 - Dsui_1642 0.13 -1.6 1,724,105 + Dsui_1642 0.21 -0.1 1,724,177 + Dsui_1642 0.26 -0.8 1,724,177 + Dsui_1642 0.26 -1.3 1,724,177 + Dsui_1642 0.26 -1.1 1,724,185 - +1.9 1,724,195 - +0.9 1,724,195 - +0.3 1,724,200 - +1.9 1,724,269 - Dsui_1642 0.33 +0.1 1,724,339 + Dsui_1642 0.39 -1.6 1,724,360 + Dsui_1642 0.40 -0.7 1,724,394 - +1.9 1,724,457 + Dsui_1642 0.48 -0.8 1,724,511 + Dsui_1642 0.52 -0.5
Or see this region's nucleotide sequence