Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1579 and Dsui_1580 are separated by 186 nucleotides Dsui_1580 and Dsui_1581 are separated by 4 nucleotides Dsui_1581 and Dsui_1582 are separated by 186 nucleotides
Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357
_1579
Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249
_1580
Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904
_1581
Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819
_1582
Position (kb)
1656
1657
1658
1659
1660 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1655.705 kb on + strand at 1655.722 kb on - strand, within Dsui_1579 at 1655.732 kb on - strand, within Dsui_1579 at 1655.916 kb on - strand, within Dsui_1579 at 1656.019 kb on - strand, within Dsui_1579 at 1656.058 kb on + strand, within Dsui_1579 at 1656.158 kb on + strand at 1656.204 kb on + strand, within Dsui_1579 at 1656.208 kb on + strand at 1656.279 kb on + strand at 1656.297 kb on - strand at 1656.359 kb on + strand at 1656.377 kb on + strand at 1656.442 kb on - strand at 1656.552 kb on - strand at 1656.552 kb on - strand at 1656.614 kb on - strand at 1656.625 kb on - strand at 1656.653 kb on + strand at 1656.841 kb on + strand, within Dsui_1580 at 1656.891 kb on - strand at 1656.953 kb on + strand, within Dsui_1580 at 1656.961 kb on - strand at 1656.961 kb on - strand, within Dsui_1580 at 1656.981 kb on + strand, within Dsui_1580 at 1657.049 kb on + strand, within Dsui_1580 at 1657.219 kb on - strand at 1657.320 kb on + strand, within Dsui_1580 at 1657.360 kb on - strand at 1657.519 kb on + strand, within Dsui_1580 at 1657.719 kb on + strand, within Dsui_1580 at 1657.719 kb on + strand, within Dsui_1580 at 1657.727 kb on - strand at 1657.739 kb on + strand, within Dsui_1580 at 1657.740 kb on - strand, within Dsui_1580 at 1657.745 kb on - strand at 1657.799 kb on - strand, within Dsui_1580 at 1657.932 kb on - strand, within Dsui_1580 at 1657.935 kb on - strand, within Dsui_1580 at 1658.150 kb on - strand, within Dsui_1580 at 1658.185 kb on + strand, within Dsui_1580 at 1658.211 kb on + strand, within Dsui_1580 at 1658.211 kb on + strand, within Dsui_1580 at 1658.290 kb on + strand, within Dsui_1580 at 1658.308 kb on - strand, within Dsui_1580 at 1658.496 kb on + strand, within Dsui_1580 at 1658.648 kb on - strand, within Dsui_1580 at 1658.827 kb on + strand, within Dsui_1580 at 1658.874 kb on - strand, within Dsui_1580 at 1658.927 kb on - strand, within Dsui_1580 at 1659.009 kb on + strand at 1659.043 kb on - strand at 1659.072 kb on + strand at 1659.080 kb on - strand at 1659.113 kb on - strand at 1659.229 kb on + strand at 1659.263 kb on + strand at 1659.268 kb on - strand at 1659.291 kb on + strand at 1659.401 kb on - strand at 1659.590 kb on - strand, within Dsui_1581 at 1659.602 kb on + strand, within Dsui_1581 at 1659.610 kb on - strand at 1659.804 kb on + strand, within Dsui_1581 at 1659.873 kb on - strand at 1659.907 kb on + strand at 1659.907 kb on - strand at 1660.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,655,705 + -0.1 1,655,722 - Dsui_1579 0.47 -0.1 1,655,732 - Dsui_1579 0.48 -1.3 1,655,916 - Dsui_1579 0.63 +0.4 1,656,019 - Dsui_1579 0.72 -0.7 1,656,058 + Dsui_1579 0.75 +0.3 1,656,158 + +1.6 1,656,204 + Dsui_1579 0.87 +1.2 1,656,208 + +1.9 1,656,279 + +1.2 1,656,297 - +0.0 1,656,359 + +1.9 1,656,377 + -1.8 1,656,442 - +0.9 1,656,552 - -0.6 1,656,552 - -1.1 1,656,614 - -0.1 1,656,625 - -1.1 1,656,653 + +0.4 1,656,841 + Dsui_1580 0.11 -0.6 1,656,891 - +0.9 1,656,953 + Dsui_1580 0.15 +0.2 1,656,961 - +0.3 1,656,961 - Dsui_1580 0.15 -0.5 1,656,981 + Dsui_1580 0.16 +0.7 1,657,049 + Dsui_1580 0.19 +1.0 1,657,219 - +2.9 1,657,320 + Dsui_1580 0.29 +0.1 1,657,360 - -0.1 1,657,519 + Dsui_1580 0.36 +0.2 1,657,719 + Dsui_1580 0.43 -0.4 1,657,719 + Dsui_1580 0.43 +0.1 1,657,727 - +0.3 1,657,739 + Dsui_1580 0.44 +0.1 1,657,740 - Dsui_1580 0.44 -0.4 1,657,745 - +1.9 1,657,799 - Dsui_1580 0.46 -1.1 1,657,932 - Dsui_1580 0.51 -0.7 1,657,935 - Dsui_1580 0.51 -0.8 1,658,150 - Dsui_1580 0.59 +0.2 1,658,185 + Dsui_1580 0.61 +0.1 1,658,211 + Dsui_1580 0.62 -0.4 1,658,211 + Dsui_1580 0.62 -0.7 1,658,290 + Dsui_1580 0.65 +0.2 1,658,308 - Dsui_1580 0.65 +0.7 1,658,496 + Dsui_1580 0.72 -0.1 1,658,648 - Dsui_1580 0.78 -1.1 1,658,827 + Dsui_1580 0.84 -0.5 1,658,874 - Dsui_1580 0.86 -0.3 1,658,927 - Dsui_1580 0.88 +0.0 1,659,009 + -0.5 1,659,043 - -0.6 1,659,072 + -0.1 1,659,080 - -0.9 1,659,113 - +0.5 1,659,229 + -1.0 1,659,263 + -0.7 1,659,268 - -3.7 1,659,291 + -1.7 1,659,401 - +0.3 1,659,590 - Dsui_1581 0.52 -2.8 1,659,602 + Dsui_1581 0.53 -3.5 1,659,610 - +0.9 1,659,804 + Dsui_1581 0.84 -2.4 1,659,873 - -0.6 1,659,907 + +0.9 1,659,907 - -0.1 1,660,143 - -0.2
Or see this region's nucleotide sequence