Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1575 and Dsui_1576 are separated by 160 nucleotides Dsui_1576 and Dsui_1577 are separated by 12 nucleotides
Dsui_1575: Dsui_1575 - hypothetical protein, at 1,646,967 to 1,648,655
_1575
Dsui_1576: Dsui_1576 - dihydrolipoamide dehydrogenase, at 1,648,816 to 1,650,561
_1576
Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241
_1577
Position (kb)
1648
1649
1650
1651 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1647.823 kb on - strand, within Dsui_1575 at 1647.884 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.961 kb on + strand, within Dsui_1575 at 1648.015 kb on - strand, within Dsui_1575 at 1648.030 kb on + strand, within Dsui_1575 at 1648.040 kb on + strand, within Dsui_1575 at 1648.055 kb on + strand, within Dsui_1575 at 1648.083 kb on - strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.178 kb on + strand, within Dsui_1575 at 1648.186 kb on + strand, within Dsui_1575 at 1648.218 kb on - strand, within Dsui_1575 at 1648.248 kb on + strand, within Dsui_1575 at 1648.257 kb on + strand, within Dsui_1575 at 1648.296 kb on + strand at 1648.321 kb on - strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.416 kb on + strand, within Dsui_1575 at 1648.528 kb on + strand at 1648.533 kb on - strand at 1648.613 kb on - strand at 1648.639 kb on - strand at 1648.639 kb on - strand at 1648.660 kb on - strand at 1648.660 kb on - strand at 1648.680 kb on - strand at 1648.721 kb on + strand at 1648.721 kb on + strand at 1648.804 kb on - strand at 1649.184 kb on - strand, within Dsui_1576 at 1649.184 kb on - strand, within Dsui_1576 at 1650.587 kb on - strand at 1651.025 kb on - strand, within Dsui_1577 at 1651.469 kb on - strand, within Dsui_1577
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,647,823 - Dsui_1575 0.51 +0.5 1,647,884 + Dsui_1575 0.54 +0.2 1,647,932 + Dsui_1575 0.57 +0.1 1,647,932 + Dsui_1575 0.57 +0.4 1,647,961 + Dsui_1575 0.59 +0.9 1,648,015 - Dsui_1575 0.62 -0.3 1,648,030 + Dsui_1575 0.63 -0.4 1,648,040 + Dsui_1575 0.64 +0.6 1,648,055 + Dsui_1575 0.64 +0.1 1,648,083 - Dsui_1575 0.66 -0.3 1,648,096 + Dsui_1575 0.67 +0.2 1,648,096 + Dsui_1575 0.67 -0.3 1,648,178 + Dsui_1575 0.72 +0.1 1,648,186 + Dsui_1575 0.72 +0.1 1,648,218 - Dsui_1575 0.74 -1.3 1,648,248 + Dsui_1575 0.76 +0.6 1,648,257 + Dsui_1575 0.76 +0.2 1,648,296 + +1.9 1,648,321 - Dsui_1575 0.80 +0.0 1,648,328 + Dsui_1575 0.81 +0.9 1,648,328 + Dsui_1575 0.81 +0.2 1,648,416 + Dsui_1575 0.86 -0.3 1,648,528 + -0.5 1,648,533 - -0.0 1,648,613 - +0.2 1,648,639 - -0.6 1,648,639 - +0.3 1,648,660 - +0.1 1,648,660 - +0.2 1,648,680 - -0.2 1,648,721 + -0.6 1,648,721 + -0.3 1,648,804 - +0.2 1,649,184 - Dsui_1576 0.21 -1.8 1,649,184 - Dsui_1576 0.21 -2.4 1,650,587 - -0.4 1,651,025 - Dsui_1577 0.27 -2.7 1,651,469 - Dsui_1577 0.54 +0.3
Or see this region's nucleotide sequence