Strain Fitness in Dechlorosoma suillum PS around Dsui_1576

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1575 and Dsui_1576 are separated by 160 nucleotidesDsui_1576 and Dsui_1577 are separated by 12 nucleotides Dsui_1575: Dsui_1575 - hypothetical protein, at 1,646,967 to 1,648,655 _1575 Dsui_1576: Dsui_1576 - dihydrolipoamide dehydrogenase, at 1,648,816 to 1,650,561 _1576 Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241 _1577 Position (kb) 1648 1649 1650 1651Strain fitness (log2 ratio) -2 -1 0 1 2at 1647.823 kb on - strand, within Dsui_1575at 1647.884 kb on + strand, within Dsui_1575at 1647.932 kb on + strand, within Dsui_1575at 1647.932 kb on + strand, within Dsui_1575at 1647.961 kb on + strand, within Dsui_1575at 1648.015 kb on - strand, within Dsui_1575at 1648.030 kb on + strand, within Dsui_1575at 1648.040 kb on + strand, within Dsui_1575at 1648.055 kb on + strand, within Dsui_1575at 1648.083 kb on - strand, within Dsui_1575at 1648.096 kb on + strand, within Dsui_1575at 1648.096 kb on + strand, within Dsui_1575at 1648.178 kb on + strand, within Dsui_1575at 1648.186 kb on + strand, within Dsui_1575at 1648.218 kb on - strand, within Dsui_1575at 1648.248 kb on + strand, within Dsui_1575at 1648.257 kb on + strand, within Dsui_1575at 1648.296 kb on + strandat 1648.321 kb on - strand, within Dsui_1575at 1648.328 kb on + strand, within Dsui_1575at 1648.328 kb on + strand, within Dsui_1575at 1648.416 kb on + strand, within Dsui_1575at 1648.528 kb on + strandat 1648.533 kb on - strandat 1648.613 kb on - strandat 1648.639 kb on - strandat 1648.639 kb on - strandat 1648.660 kb on - strandat 1648.660 kb on - strandat 1648.680 kb on - strandat 1648.721 kb on + strandat 1648.721 kb on + strandat 1648.804 kb on - strandat 1649.184 kb on - strand, within Dsui_1576at 1649.184 kb on - strand, within Dsui_1576at 1650.587 kb on - strandat 1651.025 kb on - strand, within Dsui_1577at 1651.469 kb on - strand, within Dsui_1577

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,647,823 - Dsui_1575 0.51 +0.5
1,647,884 + Dsui_1575 0.54 +0.2
1,647,932 + Dsui_1575 0.57 +0.1
1,647,932 + Dsui_1575 0.57 +0.4
1,647,961 + Dsui_1575 0.59 +0.9
1,648,015 - Dsui_1575 0.62 -0.3
1,648,030 + Dsui_1575 0.63 -0.4
1,648,040 + Dsui_1575 0.64 +0.6
1,648,055 + Dsui_1575 0.64 +0.1
1,648,083 - Dsui_1575 0.66 -0.3
1,648,096 + Dsui_1575 0.67 +0.2
1,648,096 + Dsui_1575 0.67 -0.3
1,648,178 + Dsui_1575 0.72 +0.1
1,648,186 + Dsui_1575 0.72 +0.1
1,648,218 - Dsui_1575 0.74 -1.3
1,648,248 + Dsui_1575 0.76 +0.6
1,648,257 + Dsui_1575 0.76 +0.2
1,648,296 + +1.9
1,648,321 - Dsui_1575 0.80 +0.0
1,648,328 + Dsui_1575 0.81 +0.9
1,648,328 + Dsui_1575 0.81 +0.2
1,648,416 + Dsui_1575 0.86 -0.3
1,648,528 + -0.5
1,648,533 - -0.0
1,648,613 - +0.2
1,648,639 - -0.6
1,648,639 - +0.3
1,648,660 - +0.1
1,648,660 - +0.2
1,648,680 - -0.2
1,648,721 + -0.6
1,648,721 + -0.3
1,648,804 - +0.2
1,649,184 - Dsui_1576 0.21 -1.8
1,649,184 - Dsui_1576 0.21 -2.4
1,650,587 - -0.4
1,651,025 - Dsui_1577 0.27 -2.7
1,651,469 - Dsui_1577 0.54 +0.3

Or see this region's nucleotide sequence