Strain Fitness in Dechlorosoma suillum PS around Dsui_1541

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1540 and Dsui_1541 overlap by 1 nucleotidesDsui_1541 and Dsui_1542 are separated by 117 nucleotides Dsui_1540: Dsui_1540 - NAD(FAD)-dependent dehydrogenase, at 1,600,380 to 1,601,675 _1540 Dsui_1541: Dsui_1541 - cytochrome c553, at 1,601,675 to 1,602,010 _1541 Dsui_1542: Dsui_1542 - small-conductance mechanosensitive channel, at 1,602,128 to 1,603,423 _1542 Position (kb) 1601 1602 1603Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1600.835 kb on + strand, within Dsui_1540at 1600.839 kb on + strandat 1600.884 kb on + strand, within Dsui_1540at 1600.886 kb on - strand, within Dsui_1540at 1600.898 kb on + strand, within Dsui_1540at 1600.906 kb on - strand, within Dsui_1540at 1600.906 kb on - strand, within Dsui_1540at 1600.917 kb on - strand, within Dsui_1540at 1600.942 kb on + strand, within Dsui_1540at 1601.011 kb on + strand, within Dsui_1540at 1601.072 kb on - strand, within Dsui_1540at 1601.232 kb on + strandat 1601.420 kb on + strandat 1601.465 kb on + strandat 1601.465 kb on + strandat 1601.469 kb on - strand, within Dsui_1540at 1601.644 kb on + strandat 1601.663 kb on + strandat 1601.670 kb on + strandat 1601.735 kb on + strand, within Dsui_1541at 1601.736 kb on + strandat 1601.736 kb on + strandat 1601.744 kb on - strand, within Dsui_1541at 1601.744 kb on - strand, within Dsui_1541at 1601.817 kb on + strand, within Dsui_1541at 1601.825 kb on - strand, within Dsui_1541at 1601.825 kb on - strand, within Dsui_1541at 1601.945 kb on + strand, within Dsui_1541at 1601.953 kb on - strand, within Dsui_1541at 1601.998 kb on - strandat 1602.013 kb on - strandat 1602.013 kb on - strandat 1602.042 kb on + strandat 1602.050 kb on - strandat 1602.050 kb on - strandat 1602.050 kb on - strandat 1602.050 kb on - strandat 1602.070 kb on - strandat 1602.076 kb on - strandat 1602.152 kb on - strandat 1602.273 kb on + strand, within Dsui_1542at 1602.274 kb on - strand, within Dsui_1542at 1602.304 kb on + strandat 1602.381 kb on + strandat 1602.485 kb on + strand, within Dsui_1542at 1602.509 kb on - strand, within Dsui_1542at 1602.556 kb on - strand, within Dsui_1542at 1602.770 kb on - strand, within Dsui_1542at 1602.817 kb on - strand, within Dsui_1542at 1602.888 kb on - strand, within Dsui_1542at 1602.936 kb on - strand, within Dsui_1542at 1602.948 kb on - strand, within Dsui_1542

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,600,835 + Dsui_1540 0.35 -2.5
1,600,839 + +2.9
1,600,884 + Dsui_1540 0.39 -1.1
1,600,886 - Dsui_1540 0.39 -1.3
1,600,898 + Dsui_1540 0.40 -0.7
1,600,906 - Dsui_1540 0.41 -1.6
1,600,906 - Dsui_1540 0.41 -0.6
1,600,917 - Dsui_1540 0.41 -0.8
1,600,942 + Dsui_1540 0.43 +0.7
1,601,011 + Dsui_1540 0.49 -0.4
1,601,072 - Dsui_1540 0.53 -0.7
1,601,232 + +0.3
1,601,420 + +0.9
1,601,465 + +1.9
1,601,465 + +0.9
1,601,469 - Dsui_1540 0.84 -3.1
1,601,644 + +0.9
1,601,663 + +0.9
1,601,670 + +0.3
1,601,735 + Dsui_1541 0.18 -0.0
1,601,736 + +0.9
1,601,736 + -0.1
1,601,744 - Dsui_1541 0.21 -1.6
1,601,744 - Dsui_1541 0.21 -0.8
1,601,817 + Dsui_1541 0.42 -1.8
1,601,825 - Dsui_1541 0.45 -0.0
1,601,825 - Dsui_1541 0.45 -0.7
1,601,945 + Dsui_1541 0.80 -0.4
1,601,953 - Dsui_1541 0.83 -1.0
1,601,998 - -0.4
1,602,013 - -1.9
1,602,013 - +0.0
1,602,042 + -0.2
1,602,050 - +1.1
1,602,050 - -1.9
1,602,050 - -0.3
1,602,050 - +0.3
1,602,070 - +0.5
1,602,076 - -0.1
1,602,152 - -0.1
1,602,273 + Dsui_1542 0.11 -0.3
1,602,274 - Dsui_1542 0.11 -0.1
1,602,304 + -0.4
1,602,381 + +2.2
1,602,485 + Dsui_1542 0.28 +0.3
1,602,509 - Dsui_1542 0.29 +0.2
1,602,556 - Dsui_1542 0.33 +0.9
1,602,770 - Dsui_1542 0.50 +0.8
1,602,817 - Dsui_1542 0.53 +0.5
1,602,888 - Dsui_1542 0.59 -0.0
1,602,936 - Dsui_1542 0.62 +0.6
1,602,948 - Dsui_1542 0.63 +0.8

Or see this region's nucleotide sequence