Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1540 and Dsui_1541 overlap by 1 nucleotides Dsui_1541 and Dsui_1542 are separated by 117 nucleotides
Dsui_1540: Dsui_1540 - NAD(FAD)-dependent dehydrogenase, at 1,600,380 to 1,601,675
_1540
Dsui_1541: Dsui_1541 - cytochrome c553, at 1,601,675 to 1,602,010
_1541
Dsui_1542: Dsui_1542 - small-conductance mechanosensitive channel, at 1,602,128 to 1,603,423
_1542
Position (kb)
1601
1602
1603 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1600.835 kb on + strand, within Dsui_1540 at 1600.839 kb on + strand at 1600.884 kb on + strand, within Dsui_1540 at 1600.886 kb on - strand, within Dsui_1540 at 1600.898 kb on + strand, within Dsui_1540 at 1600.906 kb on - strand, within Dsui_1540 at 1600.906 kb on - strand, within Dsui_1540 at 1600.917 kb on - strand, within Dsui_1540 at 1600.942 kb on + strand, within Dsui_1540 at 1601.011 kb on + strand, within Dsui_1540 at 1601.072 kb on - strand, within Dsui_1540 at 1601.232 kb on + strand at 1601.420 kb on + strand at 1601.465 kb on + strand at 1601.465 kb on + strand at 1601.469 kb on - strand, within Dsui_1540 at 1601.644 kb on + strand at 1601.663 kb on + strand at 1601.670 kb on + strand at 1601.735 kb on + strand, within Dsui_1541 at 1601.736 kb on + strand at 1601.736 kb on + strand at 1601.744 kb on - strand, within Dsui_1541 at 1601.744 kb on - strand, within Dsui_1541 at 1601.817 kb on + strand, within Dsui_1541 at 1601.825 kb on - strand, within Dsui_1541 at 1601.825 kb on - strand, within Dsui_1541 at 1601.945 kb on + strand, within Dsui_1541 at 1601.953 kb on - strand, within Dsui_1541 at 1601.998 kb on - strand at 1602.013 kb on - strand at 1602.013 kb on - strand at 1602.042 kb on + strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.070 kb on - strand at 1602.076 kb on - strand at 1602.152 kb on - strand at 1602.273 kb on + strand, within Dsui_1542 at 1602.274 kb on - strand, within Dsui_1542 at 1602.304 kb on + strand at 1602.381 kb on + strand at 1602.485 kb on + strand, within Dsui_1542 at 1602.509 kb on - strand, within Dsui_1542 at 1602.556 kb on - strand, within Dsui_1542 at 1602.770 kb on - strand, within Dsui_1542 at 1602.817 kb on - strand, within Dsui_1542 at 1602.888 kb on - strand, within Dsui_1542 at 1602.936 kb on - strand, within Dsui_1542 at 1602.948 kb on - strand, within Dsui_1542
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,600,835 + Dsui_1540 0.35 -2.5 1,600,839 + +2.9 1,600,884 + Dsui_1540 0.39 -1.1 1,600,886 - Dsui_1540 0.39 -1.3 1,600,898 + Dsui_1540 0.40 -0.7 1,600,906 - Dsui_1540 0.41 -1.6 1,600,906 - Dsui_1540 0.41 -0.6 1,600,917 - Dsui_1540 0.41 -0.8 1,600,942 + Dsui_1540 0.43 +0.7 1,601,011 + Dsui_1540 0.49 -0.4 1,601,072 - Dsui_1540 0.53 -0.7 1,601,232 + +0.3 1,601,420 + +0.9 1,601,465 + +1.9 1,601,465 + +0.9 1,601,469 - Dsui_1540 0.84 -3.1 1,601,644 + +0.9 1,601,663 + +0.9 1,601,670 + +0.3 1,601,735 + Dsui_1541 0.18 -0.0 1,601,736 + +0.9 1,601,736 + -0.1 1,601,744 - Dsui_1541 0.21 -1.6 1,601,744 - Dsui_1541 0.21 -0.8 1,601,817 + Dsui_1541 0.42 -1.8 1,601,825 - Dsui_1541 0.45 -0.0 1,601,825 - Dsui_1541 0.45 -0.7 1,601,945 + Dsui_1541 0.80 -0.4 1,601,953 - Dsui_1541 0.83 -1.0 1,601,998 - -0.4 1,602,013 - -1.9 1,602,013 - +0.0 1,602,042 + -0.2 1,602,050 - +1.1 1,602,050 - -1.9 1,602,050 - -0.3 1,602,050 - +0.3 1,602,070 - +0.5 1,602,076 - -0.1 1,602,152 - -0.1 1,602,273 + Dsui_1542 0.11 -0.3 1,602,274 - Dsui_1542 0.11 -0.1 1,602,304 + -0.4 1,602,381 + +2.2 1,602,485 + Dsui_1542 0.28 +0.3 1,602,509 - Dsui_1542 0.29 +0.2 1,602,556 - Dsui_1542 0.33 +0.9 1,602,770 - Dsui_1542 0.50 +0.8 1,602,817 - Dsui_1542 0.53 +0.5 1,602,888 - Dsui_1542 0.59 -0.0 1,602,936 - Dsui_1542 0.62 +0.6 1,602,948 - Dsui_1542 0.63 +0.8
Or see this region's nucleotide sequence