Strain Fitness in Dechlorosoma suillum PS around Dsui_1505

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1504 and Dsui_1505 are separated by 18 nucleotidesDsui_1505 and Dsui_1507 are separated by 308 nucleotides Dsui_1504: Dsui_1504 - trypsin-like serine protease with C-terminal PDZ domain, at 1,569,175 to 1,570,326 _1504 Dsui_1505: Dsui_1505 - phage-related lysozyme (muraminidase), at 1,570,345 to 1,570,809 _1505 Dsui_1507: Dsui_1507 - transposase, at 1,571,118 to 1,572,608 _1507 Position (kb) 1570 1571Strain fitness (log2 ratio) -1 0 1at 1569.371 kb on + strand, within Dsui_1504at 1569.371 kb on + strand, within Dsui_1504at 1569.371 kb on + strand, within Dsui_1504at 1569.379 kb on - strand, within Dsui_1504at 1569.413 kb on - strand, within Dsui_1504at 1569.554 kb on + strand, within Dsui_1504at 1569.587 kb on - strand, within Dsui_1504at 1569.594 kb on + strand, within Dsui_1504at 1569.602 kb on - strand, within Dsui_1504at 1569.723 kb on + strand, within Dsui_1504at 1569.725 kb on + strand, within Dsui_1504at 1569.862 kb on + strand, within Dsui_1504at 1570.030 kb on - strand, within Dsui_1504at 1570.075 kb on - strand, within Dsui_1504at 1570.245 kb on + strandat 1570.580 kb on - strand, within Dsui_1505at 1570.733 kb on + strand, within Dsui_1505at 1570.890 kb on + strandat 1570.968 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,569,371 + Dsui_1504 0.17 +0.0
1,569,371 + Dsui_1504 0.17 -0.2
1,569,371 + Dsui_1504 0.17 -1.2
1,569,379 - Dsui_1504 0.18 -0.4
1,569,413 - Dsui_1504 0.21 -0.4
1,569,554 + Dsui_1504 0.33 +0.1
1,569,587 - Dsui_1504 0.36 -0.6
1,569,594 + Dsui_1504 0.36 -0.2
1,569,602 - Dsui_1504 0.37 -0.0
1,569,723 + Dsui_1504 0.48 -0.1
1,569,725 + Dsui_1504 0.48 +0.0
1,569,862 + Dsui_1504 0.60 -0.9
1,570,030 - Dsui_1504 0.74 +0.2
1,570,075 - Dsui_1504 0.78 -0.4
1,570,245 + -0.5
1,570,580 - Dsui_1505 0.51 +0.3
1,570,733 + Dsui_1505 0.83 +0.2
1,570,890 + -0.1
1,570,968 - +0.2
1,571,009 - +0.3
1,571,009 - -0.0
1,571,009 - +0.7
1,571,009 - -0.3

Or see this region's nucleotide sequence