Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1499 and Dsui_1500 overlap by 11 nucleotides Dsui_1500 and Dsui_1501 are separated by 154 nucleotides
Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131
_1499
Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561
_1500
Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523
_1501
Position (kb)
1564
1565 Strain fitness (log2 ratio)
-1
0
1 at 1563.122 kb on - strand, within Dsui_1499 at 1563.135 kb on + strand, within Dsui_1499 at 1563.159 kb on + strand, within Dsui_1499 at 1563.162 kb on - strand, within Dsui_1499 at 1563.167 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.250 kb on - strand, within Dsui_1499 at 1563.261 kb on - strand, within Dsui_1499 at 1563.308 kb on - strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.445 kb on - strand, within Dsui_1499 at 1563.485 kb on + strand, within Dsui_1499 at 1563.493 kb on - strand, within Dsui_1499 at 1563.621 kb on - strand, within Dsui_1499 at 1563.681 kb on - strand, within Dsui_1499 at 1563.686 kb on - strand, within Dsui_1499 at 1563.799 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.979 kb on - strand, within Dsui_1499 at 1563.981 kb on + strand, within Dsui_1499 at 1564.044 kb on + strand at 1564.103 kb on + strand at 1564.111 kb on - strand at 1564.236 kb on - strand, within Dsui_1500 at 1564.390 kb on - strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.419 kb on + strand, within Dsui_1500 at 1564.496 kb on + strand, within Dsui_1500 at 1564.697 kb on + strand at 1564.697 kb on + strand at 1564.705 kb on - strand at 1564.728 kb on + strand at 1564.736 kb on - strand at 1564.736 kb on - strand at 1564.740 kb on + strand at 1564.748 kb on - strand at 1564.809 kb on + strand at 1564.817 kb on - strand at 1564.817 kb on - strand at 1564.846 kb on + strand at 1564.854 kb on - strand at 1564.897 kb on + strand at 1564.914 kb on + strand at 1564.922 kb on - strand at 1565.069 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.233 kb on + strand, within Dsui_1501 at 1565.238 kb on + strand, within Dsui_1501 at 1565.243 kb on + strand, within Dsui_1501 at 1565.259 kb on + strand, within Dsui_1501 at 1565.295 kb on - strand, within Dsui_1501 at 1565.426 kb on - strand, within Dsui_1501 at 1565.452 kb on + strand, within Dsui_1501 at 1565.487 kb on - strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.532 kb on - strand, within Dsui_1501 at 1565.560 kb on + strand, within Dsui_1501
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,563,122 - Dsui_1499 0.12 -0.6 1,563,135 + Dsui_1499 0.13 -0.2 1,563,159 + Dsui_1499 0.15 -0.2 1,563,162 - Dsui_1499 0.15 -0.0 1,563,167 + Dsui_1499 0.16 -0.4 1,563,170 + Dsui_1499 0.16 -0.4 1,563,170 + Dsui_1499 0.16 +0.0 1,563,200 + Dsui_1499 0.19 -0.2 1,563,200 + Dsui_1499 0.19 -0.1 1,563,250 - Dsui_1499 0.23 -0.1 1,563,261 - Dsui_1499 0.24 +0.6 1,563,308 - Dsui_1499 0.28 -0.5 1,563,341 + Dsui_1499 0.31 +0.3 1,563,341 + Dsui_1499 0.31 -0.5 1,563,445 - Dsui_1499 0.40 -0.4 1,563,485 + Dsui_1499 0.44 +0.0 1,563,493 - Dsui_1499 0.44 -0.3 1,563,621 - Dsui_1499 0.55 +0.2 1,563,681 - Dsui_1499 0.61 -1.4 1,563,686 - Dsui_1499 0.61 -0.2 1,563,799 + Dsui_1499 0.71 -0.5 1,563,961 + Dsui_1499 0.85 -0.8 1,563,961 + Dsui_1499 0.85 -0.4 1,563,961 + Dsui_1499 0.85 -0.1 1,563,961 + Dsui_1499 0.85 -0.1 1,563,969 - Dsui_1499 0.86 +0.8 1,563,969 - Dsui_1499 0.86 -0.1 1,563,979 - Dsui_1499 0.87 -0.6 1,563,981 + Dsui_1499 0.87 -0.7 1,564,044 + -1.4 1,564,103 + -0.3 1,564,111 - -0.1 1,564,236 - Dsui_1500 0.26 -0.7 1,564,390 - Dsui_1500 0.61 -0.7 1,564,402 + Dsui_1500 0.64 -0.5 1,564,402 + Dsui_1500 0.64 -0.2 1,564,419 + Dsui_1500 0.68 -0.3 1,564,496 + Dsui_1500 0.85 -0.3 1,564,697 + -0.6 1,564,697 + -0.4 1,564,705 - -0.5 1,564,728 + +0.3 1,564,736 - -0.1 1,564,736 - +0.0 1,564,740 + +0.1 1,564,748 - -0.4 1,564,809 + -0.6 1,564,817 - -0.6 1,564,817 - -1.1 1,564,846 + -1.4 1,564,854 - -0.2 1,564,897 + -0.2 1,564,914 + +0.3 1,564,922 - -0.2 1,565,069 + Dsui_1501 0.13 -0.1 1,565,199 + Dsui_1501 0.17 +0.2 1,565,199 + Dsui_1501 0.17 -0.1 1,565,233 + Dsui_1501 0.18 -0.2 1,565,238 + Dsui_1501 0.19 +0.1 1,565,243 + Dsui_1501 0.19 -0.8 1,565,259 + Dsui_1501 0.19 -0.2 1,565,295 - Dsui_1501 0.21 -0.1 1,565,426 - Dsui_1501 0.25 -0.4 1,565,452 + Dsui_1501 0.26 -0.6 1,565,487 - Dsui_1501 0.27 -0.1 1,565,529 + Dsui_1501 0.29 -0.5 1,565,529 + Dsui_1501 0.29 -0.9 1,565,532 - Dsui_1501 0.29 -0.6 1,565,560 + Dsui_1501 0.30 -0.2
Or see this region's nucleotide sequence