Strain Fitness in Dechlorosoma suillum PS around Dsui_1500

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1499 and Dsui_1500 overlap by 11 nucleotidesDsui_1500 and Dsui_1501 are separated by 154 nucleotides Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131 _1499 Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561 _1500 Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523 _1501 Position (kb) 1564 1565Strain fitness (log2 ratio) -1 0 1at 1563.122 kb on - strand, within Dsui_1499at 1563.135 kb on + strand, within Dsui_1499at 1563.159 kb on + strand, within Dsui_1499at 1563.162 kb on - strand, within Dsui_1499at 1563.167 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499at 1563.200 kb on + strand, within Dsui_1499at 1563.200 kb on + strand, within Dsui_1499at 1563.250 kb on - strand, within Dsui_1499at 1563.261 kb on - strand, within Dsui_1499at 1563.308 kb on - strand, within Dsui_1499at 1563.341 kb on + strand, within Dsui_1499at 1563.341 kb on + strand, within Dsui_1499at 1563.445 kb on - strand, within Dsui_1499at 1563.485 kb on + strand, within Dsui_1499at 1563.493 kb on - strand, within Dsui_1499at 1563.621 kb on - strand, within Dsui_1499at 1563.681 kb on - strand, within Dsui_1499at 1563.686 kb on - strand, within Dsui_1499at 1563.799 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.979 kb on - strand, within Dsui_1499at 1563.981 kb on + strand, within Dsui_1499at 1564.044 kb on + strandat 1564.103 kb on + strandat 1564.111 kb on - strandat 1564.236 kb on - strand, within Dsui_1500at 1564.390 kb on - strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.419 kb on + strand, within Dsui_1500at 1564.496 kb on + strand, within Dsui_1500at 1564.697 kb on + strandat 1564.697 kb on + strandat 1564.705 kb on - strandat 1564.728 kb on + strandat 1564.736 kb on - strandat 1564.736 kb on - strandat 1564.740 kb on + strandat 1564.748 kb on - strandat 1564.809 kb on + strandat 1564.817 kb on - strandat 1564.817 kb on - strandat 1564.846 kb on + strandat 1564.854 kb on - strandat 1564.897 kb on + strandat 1564.914 kb on + strandat 1564.922 kb on - strandat 1565.069 kb on + strand, within Dsui_1501at 1565.199 kb on + strand, within Dsui_1501at 1565.199 kb on + strand, within Dsui_1501at 1565.233 kb on + strand, within Dsui_1501at 1565.238 kb on + strand, within Dsui_1501at 1565.243 kb on + strand, within Dsui_1501at 1565.259 kb on + strand, within Dsui_1501at 1565.295 kb on - strand, within Dsui_1501at 1565.426 kb on - strand, within Dsui_1501at 1565.452 kb on + strand, within Dsui_1501at 1565.487 kb on - strand, within Dsui_1501at 1565.529 kb on + strand, within Dsui_1501at 1565.529 kb on + strand, within Dsui_1501at 1565.532 kb on - strand, within Dsui_1501at 1565.560 kb on + strand, within Dsui_1501

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,563,122 - Dsui_1499 0.12 -0.6
1,563,135 + Dsui_1499 0.13 -0.2
1,563,159 + Dsui_1499 0.15 -0.2
1,563,162 - Dsui_1499 0.15 -0.0
1,563,167 + Dsui_1499 0.16 -0.4
1,563,170 + Dsui_1499 0.16 -0.4
1,563,170 + Dsui_1499 0.16 +0.0
1,563,200 + Dsui_1499 0.19 -0.2
1,563,200 + Dsui_1499 0.19 -0.1
1,563,250 - Dsui_1499 0.23 -0.1
1,563,261 - Dsui_1499 0.24 +0.6
1,563,308 - Dsui_1499 0.28 -0.5
1,563,341 + Dsui_1499 0.31 +0.3
1,563,341 + Dsui_1499 0.31 -0.5
1,563,445 - Dsui_1499 0.40 -0.4
1,563,485 + Dsui_1499 0.44 +0.0
1,563,493 - Dsui_1499 0.44 -0.3
1,563,621 - Dsui_1499 0.55 +0.2
1,563,681 - Dsui_1499 0.61 -1.4
1,563,686 - Dsui_1499 0.61 -0.2
1,563,799 + Dsui_1499 0.71 -0.5
1,563,961 + Dsui_1499 0.85 -0.8
1,563,961 + Dsui_1499 0.85 -0.4
1,563,961 + Dsui_1499 0.85 -0.1
1,563,961 + Dsui_1499 0.85 -0.1
1,563,969 - Dsui_1499 0.86 +0.8
1,563,969 - Dsui_1499 0.86 -0.1
1,563,979 - Dsui_1499 0.87 -0.6
1,563,981 + Dsui_1499 0.87 -0.7
1,564,044 + -1.4
1,564,103 + -0.3
1,564,111 - -0.1
1,564,236 - Dsui_1500 0.26 -0.7
1,564,390 - Dsui_1500 0.61 -0.7
1,564,402 + Dsui_1500 0.64 -0.5
1,564,402 + Dsui_1500 0.64 -0.2
1,564,419 + Dsui_1500 0.68 -0.3
1,564,496 + Dsui_1500 0.85 -0.3
1,564,697 + -0.6
1,564,697 + -0.4
1,564,705 - -0.5
1,564,728 + +0.3
1,564,736 - -0.1
1,564,736 - +0.0
1,564,740 + +0.1
1,564,748 - -0.4
1,564,809 + -0.6
1,564,817 - -0.6
1,564,817 - -1.1
1,564,846 + -1.4
1,564,854 - -0.2
1,564,897 + -0.2
1,564,914 + +0.3
1,564,922 - -0.2
1,565,069 + Dsui_1501 0.13 -0.1
1,565,199 + Dsui_1501 0.17 +0.2
1,565,199 + Dsui_1501 0.17 -0.1
1,565,233 + Dsui_1501 0.18 -0.2
1,565,238 + Dsui_1501 0.19 +0.1
1,565,243 + Dsui_1501 0.19 -0.8
1,565,259 + Dsui_1501 0.19 -0.2
1,565,295 - Dsui_1501 0.21 -0.1
1,565,426 - Dsui_1501 0.25 -0.4
1,565,452 + Dsui_1501 0.26 -0.6
1,565,487 - Dsui_1501 0.27 -0.1
1,565,529 + Dsui_1501 0.29 -0.5
1,565,529 + Dsui_1501 0.29 -0.9
1,565,532 - Dsui_1501 0.29 -0.6
1,565,560 + Dsui_1501 0.30 -0.2

Or see this region's nucleotide sequence