Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1360 and Dsui_1361 are separated by 184 nucleotides Dsui_1361 and Dsui_1362 are separated by 1 nucleotides Dsui_1362 and Dsui_1363 are separated by 12 nucleotides Dsui_1363 and Dsui_1364 are separated by 23 nucleotides
Dsui_1360: Dsui_1360 - hypothetical protein, at 1,414,266 to 1,415,540
_1360
Dsui_1361: Dsui_1361 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,415,725 to 1,416,501
_1361
Dsui_1362: Dsui_1362 - protein of unknown function (DUF1987), at 1,416,503 to 1,416,880
_1362
Dsui_1363: Dsui_1363 - hypothetical protein, at 1,416,893 to 1,417,441
_1363
Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462
_1364
Position (kb)
1416
1417 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.736 kb on - strand at 1415.827 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1416.135 kb on + strand, within Dsui_1361 at 1416.152 kb on + strand, within Dsui_1361 at 1416.160 kb on - strand, within Dsui_1361 at 1416.201 kb on + strand, within Dsui_1361 at 1416.214 kb on - strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.257 kb on + strand at 1416.285 kb on + strand, within Dsui_1361 at 1416.311 kb on + strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.351 kb on + strand, within Dsui_1361 at 1416.643 kb on + strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.723 kb on + strand, within Dsui_1362 at 1416.745 kb on - strand, within Dsui_1362 at 1416.758 kb on + strand, within Dsui_1362 at 1416.759 kb on + strand, within Dsui_1362 at 1416.767 kb on - strand, within Dsui_1362 at 1416.792 kb on - strand, within Dsui_1362 at 1416.862 kb on - strand at 1416.873 kb on - strand at 1416.997 kb on + strand, within Dsui_1363 at 1417.018 kb on - strand, within Dsui_1363 at 1417.018 kb on - strand, within Dsui_1363 at 1417.044 kb on - strand, within Dsui_1363 at 1417.095 kb on - strand, within Dsui_1363 at 1417.158 kb on - strand, within Dsui_1363 at 1417.198 kb on + strand, within Dsui_1363 at 1417.212 kb on - strand, within Dsui_1363 at 1417.219 kb on + strand, within Dsui_1363 at 1417.266 kb on - strand, within Dsui_1363 at 1417.299 kb on + strand, within Dsui_1363 at 1417.313 kb on + strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.403 kb on - strand at 1417.468 kb on + strand at 1417.597 kb on + strand at 1417.628 kb on + strand at 1417.636 kb on - strand at 1417.643 kb on + strand at 1417.670 kb on - strand, within Dsui_1364 at 1417.677 kb on + strand at 1417.677 kb on + strand, within Dsui_1364 at 1417.677 kb on + strand, within Dsui_1364 at 1417.685 kb on - strand, within Dsui_1364 at 1417.685 kb on - strand, within Dsui_1364 at 1417.685 kb on - strand, within Dsui_1364 at 1417.685 kb on - strand, within Dsui_1364 at 1417.860 kb on - strand, within Dsui_1364 at 1417.863 kb on + strand, within Dsui_1364 at 1417.866 kb on - strand, within Dsui_1364
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,415,728 + -0.0 1,415,728 + +0.6 1,415,728 + -0.0 1,415,736 - +1.2 1,415,827 + Dsui_1361 0.13 +0.2 1,415,832 + Dsui_1361 0.14 -1.1 1,415,832 + Dsui_1361 0.14 +0.8 1,416,135 + Dsui_1361 0.53 -0.6 1,416,152 + Dsui_1361 0.55 -0.1 1,416,160 - Dsui_1361 0.56 +0.1 1,416,201 + Dsui_1361 0.61 +0.0 1,416,214 - Dsui_1361 0.63 +0.2 1,416,245 + Dsui_1361 0.67 +0.6 1,416,245 + Dsui_1361 0.67 +0.4 1,416,257 + -0.9 1,416,285 + Dsui_1361 0.72 +0.0 1,416,311 + Dsui_1361 0.75 -2.2 1,416,319 - Dsui_1361 0.76 -0.4 1,416,319 - Dsui_1361 0.76 -0.5 1,416,319 - Dsui_1361 0.76 -0.1 1,416,319 - Dsui_1361 0.76 -0.1 1,416,351 + Dsui_1361 0.81 +0.7 1,416,643 + Dsui_1362 0.37 +0.2 1,416,651 - Dsui_1362 0.39 -0.1 1,416,651 - Dsui_1362 0.39 -0.5 1,416,651 - Dsui_1362 0.39 +1.1 1,416,651 - Dsui_1362 0.39 +0.1 1,416,723 + Dsui_1362 0.58 +0.1 1,416,745 - Dsui_1362 0.64 +0.0 1,416,758 + Dsui_1362 0.67 +0.5 1,416,759 + Dsui_1362 0.68 +0.2 1,416,767 - Dsui_1362 0.70 +0.2 1,416,792 - Dsui_1362 0.76 -0.2 1,416,862 - +0.4 1,416,873 - +0.3 1,416,997 + Dsui_1363 0.19 +0.2 1,417,018 - Dsui_1363 0.23 +0.5 1,417,018 - Dsui_1363 0.23 -0.3 1,417,044 - Dsui_1363 0.28 +0.1 1,417,095 - Dsui_1363 0.37 +0.5 1,417,158 - Dsui_1363 0.48 +0.2 1,417,198 + Dsui_1363 0.56 -0.6 1,417,212 - Dsui_1363 0.58 +0.6 1,417,219 + Dsui_1363 0.59 -0.9 1,417,266 - Dsui_1363 0.68 -0.1 1,417,299 + Dsui_1363 0.74 -1.0 1,417,313 + Dsui_1363 0.77 +0.5 1,417,321 - Dsui_1363 0.78 -0.3 1,417,321 - Dsui_1363 0.78 +0.0 1,417,321 - Dsui_1363 0.78 -0.4 1,417,403 - -0.3 1,417,468 + +0.9 1,417,597 + +1.7 1,417,628 + +0.1 1,417,636 - +1.9 1,417,643 + -0.7 1,417,670 - Dsui_1364 0.10 -1.0 1,417,677 + +1.9 1,417,677 + Dsui_1364 0.11 +1.7 1,417,677 + Dsui_1364 0.11 +1.3 1,417,685 - Dsui_1364 0.11 +0.7 1,417,685 - Dsui_1364 0.11 -0.6 1,417,685 - Dsui_1364 0.11 -0.5 1,417,685 - Dsui_1364 0.11 -1.5 1,417,860 - Dsui_1364 0.20 -0.2 1,417,863 + Dsui_1364 0.20 -0.7 1,417,866 - Dsui_1364 0.20 -0.8
Or see this region's nucleotide sequence