Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1040 and Dsui_1041 are separated by 25 nucleotides Dsui_1041 and Dsui_1042 are separated by 5 nucleotides Dsui_1042 and Dsui_1043 are separated by 87 nucleotides
Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532
_1040
Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718
_1041
Dsui_1042: Dsui_1042 - metal-dependent hydrolase, at 1,073,724 to 1,074,479
_1042
Dsui_1043: Dsui_1043 - quinolinate synthetase complex, A subunit, at 1,074,567 to 1,075,664
_1043
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1071.570 kb on + strand at 1071.804 kb on + strand, within Dsui_1040 at 1071.896 kb on - strand, within Dsui_1040 at 1071.956 kb on + strand, within Dsui_1040 at 1071.989 kb on + strand, within Dsui_1040 at 1072.035 kb on + strand, within Dsui_1040 at 1072.105 kb on + strand, within Dsui_1040 at 1072.181 kb on + strand, within Dsui_1040 at 1072.187 kb on + strand, within Dsui_1040 at 1072.269 kb on - strand, within Dsui_1040 at 1072.351 kb on + strand, within Dsui_1040 at 1072.466 kb on + strand at 1072.484 kb on + strand at 1072.491 kb on - strand at 1072.530 kb on - strand at 1072.671 kb on + strand at 1072.698 kb on + strand, within Dsui_1041 at 1072.724 kb on - strand, within Dsui_1041 at 1072.813 kb on + strand, within Dsui_1041 at 1072.868 kb on + strand, within Dsui_1041 at 1072.913 kb on + strand, within Dsui_1041 at 1072.942 kb on + strand, within Dsui_1041 at 1073.053 kb on + strand, within Dsui_1041 at 1073.280 kb on + strand, within Dsui_1041 at 1073.364 kb on - strand, within Dsui_1041 at 1073.526 kb on + strand at 1073.546 kb on + strand, within Dsui_1041 at 1073.672 kb on + strand at 1073.672 kb on + strand at 1073.720 kb on - strand at 1073.726 kb on + strand at 1073.731 kb on + strand at 1073.876 kb on - strand, within Dsui_1042 at 1073.939 kb on + strand, within Dsui_1042 at 1074.303 kb on + strand, within Dsui_1042 at 1074.329 kb on + strand, within Dsui_1042 at 1074.412 kb on - strand at 1074.454 kb on + strand at 1074.462 kb on - strand at 1074.464 kb on + strand at 1074.472 kb on - strand at 1074.497 kb on + strand at 1074.505 kb on + strand at 1074.553 kb on + strand at 1074.561 kb on - strand at 1074.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,071,570 + -0.3 1,071,804 + Dsui_1040 0.20 -0.9 1,071,896 - Dsui_1040 0.30 -0.4 1,071,956 + Dsui_1040 0.37 -0.6 1,071,989 + Dsui_1040 0.40 +1.1 1,072,035 + Dsui_1040 0.45 +3.5 1,072,105 + Dsui_1040 0.53 -0.8 1,072,181 + Dsui_1040 0.61 +0.4 1,072,187 + Dsui_1040 0.62 -0.1 1,072,269 - Dsui_1040 0.71 +0.9 1,072,351 + Dsui_1040 0.80 -0.1 1,072,466 + +0.3 1,072,484 + -0.2 1,072,491 - -0.8 1,072,530 - -0.8 1,072,671 + +0.4 1,072,698 + Dsui_1041 0.12 +0.4 1,072,724 - Dsui_1041 0.14 -1.8 1,072,813 + Dsui_1041 0.22 -1.6 1,072,868 + Dsui_1041 0.27 -0.3 1,072,913 + Dsui_1041 0.31 -1.1 1,072,942 + Dsui_1041 0.33 -1.0 1,073,053 + Dsui_1041 0.43 -1.8 1,073,280 + Dsui_1041 0.62 -1.6 1,073,364 - Dsui_1041 0.69 +0.7 1,073,526 + +0.9 1,073,546 + Dsui_1041 0.85 -0.7 1,073,672 + -0.2 1,073,672 + -1.2 1,073,720 - -1.1 1,073,726 + -0.6 1,073,731 + -0.9 1,073,876 - Dsui_1042 0.20 -0.7 1,073,939 + Dsui_1042 0.28 -0.1 1,074,303 + Dsui_1042 0.77 -0.6 1,074,329 + Dsui_1042 0.80 -0.1 1,074,412 - -0.1 1,074,454 + +0.1 1,074,462 - +0.1 1,074,464 + +0.3 1,074,472 - -0.9 1,074,497 + -0.0 1,074,505 + -0.2 1,074,553 + -0.5 1,074,561 - -0.2 1,074,563 - +0.2
Or see this region's nucleotide sequence