Strain Fitness in Dechlorosoma suillum PS around Dsui_1040

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1039 and Dsui_1040 are separated by 82 nucleotidesDsui_1040 and Dsui_1041 are separated by 25 nucleotides Dsui_1039: Dsui_1039 - GTP-binding protein YchF, at 1,070,447 to 1,071,538 _1039 Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532 _1040 Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718 _1041 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1071.570 kb on + strandat 1071.804 kb on + strand, within Dsui_1040at 1071.896 kb on - strand, within Dsui_1040at 1071.956 kb on + strand, within Dsui_1040at 1071.989 kb on + strand, within Dsui_1040at 1072.035 kb on + strand, within Dsui_1040at 1072.105 kb on + strand, within Dsui_1040at 1072.181 kb on + strand, within Dsui_1040at 1072.187 kb on + strand, within Dsui_1040at 1072.269 kb on - strand, within Dsui_1040at 1072.351 kb on + strand, within Dsui_1040at 1072.466 kb on + strandat 1072.484 kb on + strandat 1072.491 kb on - strandat 1072.530 kb on - strandat 1072.671 kb on + strandat 1072.698 kb on + strand, within Dsui_1041at 1072.724 kb on - strand, within Dsui_1041at 1072.813 kb on + strand, within Dsui_1041at 1072.868 kb on + strand, within Dsui_1041at 1072.913 kb on + strand, within Dsui_1041at 1072.942 kb on + strand, within Dsui_1041at 1073.053 kb on + strand, within Dsui_1041at 1073.280 kb on + strand, within Dsui_1041at 1073.364 kb on - strand, within Dsui_1041at 1073.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,071,570 + -0.3
1,071,804 + Dsui_1040 0.20 -0.9
1,071,896 - Dsui_1040 0.30 -0.4
1,071,956 + Dsui_1040 0.37 -0.6
1,071,989 + Dsui_1040 0.40 +1.1
1,072,035 + Dsui_1040 0.45 +3.5
1,072,105 + Dsui_1040 0.53 -0.8
1,072,181 + Dsui_1040 0.61 +0.4
1,072,187 + Dsui_1040 0.62 -0.1
1,072,269 - Dsui_1040 0.71 +0.9
1,072,351 + Dsui_1040 0.80 -0.1
1,072,466 + +0.3
1,072,484 + -0.2
1,072,491 - -0.8
1,072,530 - -0.8
1,072,671 + +0.4
1,072,698 + Dsui_1041 0.12 +0.4
1,072,724 - Dsui_1041 0.14 -1.8
1,072,813 + Dsui_1041 0.22 -1.6
1,072,868 + Dsui_1041 0.27 -0.3
1,072,913 + Dsui_1041 0.31 -1.1
1,072,942 + Dsui_1041 0.33 -1.0
1,073,053 + Dsui_1041 0.43 -1.8
1,073,280 + Dsui_1041 0.62 -1.6
1,073,364 - Dsui_1041 0.69 +0.7
1,073,526 + +0.9

Or see this region's nucleotide sequence