Strain Fitness in Dechlorosoma suillum PS around Dsui_1003

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1001 and Dsui_1002 overlap by 4 nucleotidesDsui_1002 and Dsui_1003 are separated by 15 nucleotidesDsui_1003 and Dsui_1004 are separated by 113 nucleotidesDsui_1004 and Dsui_1005 are separated by 88 nucleotidesDsui_1005 and Dsui_1006 are separated by 40 nucleotides Dsui_1001: Dsui_1001 - hypothetical protein, at 1,028,965 to 1,030,335 _1001 Dsui_1002: Dsui_1002 - prolyl oligopeptidase family protein, at 1,030,332 to 1,031,246 _1002 Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494 _1003 Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159 _1004 Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321 _1005 Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282 _1006 Position (kb) 1031 1032 1033Strain fitness (log2 ratio) -1 0 1 2at 1030.278 kb on + strandat 1030.298 kb on + strandat 1030.358 kb on - strandat 1030.552 kb on + strand, within Dsui_1002at 1030.631 kb on + strandat 1030.649 kb on - strand, within Dsui_1002at 1030.958 kb on - strand, within Dsui_1002at 1031.172 kb on + strandat 1031.175 kb on - strandat 1031.180 kb on - strandat 1031.336 kb on + strandat 1031.360 kb on + strandat 1031.388 kb on + strandat 1031.422 kb on - strand, within Dsui_1003at 1031.438 kb on - strand, within Dsui_1003at 1031.438 kb on - strand, within Dsui_1003at 1031.466 kb on - strand, within Dsui_1003at 1031.516 kb on + strand, within Dsui_1003at 1031.543 kb on - strand, within Dsui_1003at 1031.596 kb on - strand, within Dsui_1003at 1031.647 kb on + strandat 1031.725 kb on - strand, within Dsui_1003at 1031.748 kb on + strand, within Dsui_1003at 1031.783 kb on - strand, within Dsui_1003at 1031.828 kb on + strandat 1031.828 kb on + strand, within Dsui_1003at 1031.988 kb on - strand, within Dsui_1003at 1032.031 kb on + strand, within Dsui_1003at 1032.049 kb on + strand, within Dsui_1003at 1032.229 kb on - strand, within Dsui_1003at 1032.384 kb on + strandat 1032.394 kb on - strandat 1032.630 kb on + strandat 1032.710 kb on + strand, within Dsui_1004at 1032.849 kb on + strand, within Dsui_1004at 1032.884 kb on - strandat 1032.928 kb on - strandat 1033.006 kb on - strandat 1033.174 kb on + strandat 1033.257 kb on + strand, within Dsui_1005at 1033.269 kb on + strand, within Dsui_1005at 1033.277 kb on - strandat 1033.284 kb on + strand, within Dsui_1005at 1033.349 kb on - strandat 1033.403 kb on - strandat 1033.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,030,278 + -0.7
1,030,298 + -0.7
1,030,358 - +0.4
1,030,552 + Dsui_1002 0.24 -0.0
1,030,631 + +0.4
1,030,649 - Dsui_1002 0.35 -0.7
1,030,958 - Dsui_1002 0.68 +0.6
1,031,172 + +0.2
1,031,175 - +1.0
1,031,180 - +0.3
1,031,336 + +0.5
1,031,360 + -0.3
1,031,388 + +0.6
1,031,422 - Dsui_1003 0.13 -0.2
1,031,438 - Dsui_1003 0.14 +0.4
1,031,438 - Dsui_1003 0.14 -1.2
1,031,466 - Dsui_1003 0.17 +0.2
1,031,516 + Dsui_1003 0.21 -1.3
1,031,543 - Dsui_1003 0.23 +0.1
1,031,596 - Dsui_1003 0.27 -0.1
1,031,647 + +2.0
1,031,725 - Dsui_1003 0.38 +0.3
1,031,748 + Dsui_1003 0.39 -0.4
1,031,783 - Dsui_1003 0.42 -0.1
1,031,828 + +1.0
1,031,828 + Dsui_1003 0.46 +0.0
1,031,988 - Dsui_1003 0.59 +0.8
1,032,031 + Dsui_1003 0.62 +0.7
1,032,049 + Dsui_1003 0.64 +1.2
1,032,229 - Dsui_1003 0.78 +0.2
1,032,384 + +0.1
1,032,394 - +0.5
1,032,630 + +2.0
1,032,710 + Dsui_1004 0.18 +1.2
1,032,849 + Dsui_1004 0.44 -0.0
1,032,884 - -1.0
1,032,928 - +1.0
1,033,006 - -0.4
1,033,174 + +0.4
1,033,257 + Dsui_1005 0.12 +0.2
1,033,269 + Dsui_1005 0.28 +0.1
1,033,277 - -0.0
1,033,284 + Dsui_1005 0.49 +1.0
1,033,349 - +0.6
1,033,403 - -0.5
1,033,413 - -0.0

Or see this region's nucleotide sequence