Strain Fitness in Dechlorosoma suillum PS around Dsui_0999

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0998 and Dsui_0999 are separated by 125 nucleotidesDsui_0999 and Dsui_1000 overlap by 4 nucleotides Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609 _0998 Dsui_0999: Dsui_0999 - MoxR-like ATPase, at 1,026,735 to 1,027,658 _0999 Dsui_1000: Dsui_1000 - hypothetical protein, at 1,027,655 to 1,028,968 _1000 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -2 -1 0 1 2at 1025.736 kb on - strand, within Dsui_0998at 1025.751 kb on + strand, within Dsui_0998at 1025.864 kb on - strand, within Dsui_0998at 1025.954 kb on - strand, within Dsui_0998at 1026.015 kb on + strand, within Dsui_0998at 1026.020 kb on + strand, within Dsui_0998at 1026.164 kb on + strandat 1026.352 kb on - strand, within Dsui_0998at 1026.464 kb on - strand, within Dsui_0998at 1026.546 kb on - strandat 1026.607 kb on - strandat 1026.607 kb on - strandat 1026.615 kb on + strandat 1026.615 kb on + strandat 1026.680 kb on - strandat 1026.752 kb on - strandat 1026.776 kb on - strandat 1026.868 kb on + strand, within Dsui_0999at 1026.886 kb on - strandat 1026.893 kb on - strand, within Dsui_0999at 1026.946 kb on + strand, within Dsui_0999at 1027.019 kb on + strand, within Dsui_0999at 1027.121 kb on + strand, within Dsui_0999at 1027.124 kb on - strandat 1027.159 kb on + strandat 1027.247 kb on - strand, within Dsui_0999at 1027.426 kb on + strand, within Dsui_0999at 1027.462 kb on + strand, within Dsui_0999at 1027.468 kb on + strand, within Dsui_0999at 1027.472 kb on + strand, within Dsui_0999at 1027.488 kb on + strand, within Dsui_0999at 1027.491 kb on - strandat 1027.530 kb on - strandat 1027.560 kb on + strand, within Dsui_0999at 1027.562 kb on - strandat 1027.630 kb on + strandat 1027.850 kb on + strand, within Dsui_1000at 1027.949 kb on + strand, within Dsui_1000at 1027.956 kb on + strand, within Dsui_1000at 1028.249 kb on - strandat 1028.431 kb on - strand, within Dsui_1000at 1028.441 kb on - strandat 1028.450 kb on + strandat 1028.577 kb on - strandat 1028.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,025,736 - Dsui_0998 0.18 +0.3
1,025,751 + Dsui_0998 0.19 +1.0
1,025,864 - Dsui_0998 0.30 -1.0
1,025,954 - Dsui_0998 0.38 -0.2
1,026,015 + Dsui_0998 0.44 +0.6
1,026,020 + Dsui_0998 0.44 +1.0
1,026,164 + +1.0
1,026,352 - Dsui_0998 0.76 +1.0
1,026,464 - Dsui_0998 0.86 -0.6
1,026,546 - -1.8
1,026,607 - +1.0
1,026,607 - -0.1
1,026,615 + -0.4
1,026,615 + -0.0
1,026,680 - -0.3
1,026,752 - +1.5
1,026,776 - +2.5
1,026,868 + Dsui_0999 0.14 -0.9
1,026,886 - +2.0
1,026,893 - Dsui_0999 0.17 -2.0
1,026,946 + Dsui_0999 0.23 -0.2
1,027,019 + Dsui_0999 0.31 -1.4
1,027,121 + Dsui_0999 0.42 +0.5
1,027,124 - -0.0
1,027,159 + +0.4
1,027,247 - Dsui_0999 0.55 -1.9
1,027,426 + Dsui_0999 0.75 -1.6
1,027,462 + Dsui_0999 0.79 +0.1
1,027,468 + Dsui_0999 0.79 -1.4
1,027,472 + Dsui_0999 0.80 +0.1
1,027,488 + Dsui_0999 0.81 -1.5
1,027,491 - +2.0
1,027,530 - +2.0
1,027,560 + Dsui_0999 0.89 -0.4
1,027,562 - +1.0
1,027,630 + -0.0
1,027,850 + Dsui_1000 0.15 +0.6
1,027,949 + Dsui_1000 0.22 +0.0
1,027,956 + Dsui_1000 0.23 +0.6
1,028,249 - -0.6
1,028,431 - Dsui_1000 0.59 -0.2
1,028,441 - +1.0
1,028,450 + +1.0
1,028,577 - +1.0
1,028,602 - +1.0

Or see this region's nucleotide sequence