Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0998 and Dsui_0999 are separated by 125 nucleotides Dsui_0999 and Dsui_1000 overlap by 4 nucleotides
Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609
_0998
Dsui_0999: Dsui_0999 - MoxR-like ATPase, at 1,026,735 to 1,027,658
_0999
Dsui_1000: Dsui_1000 - hypothetical protein, at 1,027,655 to 1,028,968
_1000
Position (kb)
1026
1027
1028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1025.736 kb on - strand, within Dsui_0998 at 1025.751 kb on + strand, within Dsui_0998 at 1025.864 kb on - strand, within Dsui_0998 at 1025.954 kb on - strand, within Dsui_0998 at 1026.015 kb on + strand, within Dsui_0998 at 1026.020 kb on + strand, within Dsui_0998 at 1026.164 kb on + strand at 1026.352 kb on - strand, within Dsui_0998 at 1026.464 kb on - strand, within Dsui_0998 at 1026.546 kb on - strand at 1026.607 kb on - strand at 1026.607 kb on - strand at 1026.615 kb on + strand at 1026.615 kb on + strand at 1026.680 kb on - strand at 1026.752 kb on - strand at 1026.776 kb on - strand at 1026.868 kb on + strand, within Dsui_0999 at 1026.886 kb on - strand at 1026.893 kb on - strand, within Dsui_0999 at 1026.946 kb on + strand, within Dsui_0999 at 1027.019 kb on + strand, within Dsui_0999 at 1027.121 kb on + strand, within Dsui_0999 at 1027.124 kb on - strand at 1027.159 kb on + strand at 1027.247 kb on - strand, within Dsui_0999 at 1027.426 kb on + strand, within Dsui_0999 at 1027.462 kb on + strand, within Dsui_0999 at 1027.468 kb on + strand, within Dsui_0999 at 1027.472 kb on + strand, within Dsui_0999 at 1027.488 kb on + strand, within Dsui_0999 at 1027.491 kb on - strand at 1027.530 kb on - strand at 1027.560 kb on + strand, within Dsui_0999 at 1027.562 kb on - strand at 1027.630 kb on + strand at 1027.850 kb on + strand, within Dsui_1000 at 1027.949 kb on + strand, within Dsui_1000 at 1027.956 kb on + strand, within Dsui_1000 at 1028.249 kb on - strand at 1028.431 kb on - strand, within Dsui_1000 at 1028.441 kb on - strand at 1028.450 kb on + strand at 1028.577 kb on - strand at 1028.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,025,736 - Dsui_0998 0.18 +0.3 1,025,751 + Dsui_0998 0.19 +1.0 1,025,864 - Dsui_0998 0.30 -1.0 1,025,954 - Dsui_0998 0.38 -0.2 1,026,015 + Dsui_0998 0.44 +0.6 1,026,020 + Dsui_0998 0.44 +1.0 1,026,164 + +1.0 1,026,352 - Dsui_0998 0.76 +1.0 1,026,464 - Dsui_0998 0.86 -0.6 1,026,546 - -1.8 1,026,607 - +1.0 1,026,607 - -0.1 1,026,615 + -0.4 1,026,615 + -0.0 1,026,680 - -0.3 1,026,752 - +1.5 1,026,776 - +2.5 1,026,868 + Dsui_0999 0.14 -0.9 1,026,886 - +2.0 1,026,893 - Dsui_0999 0.17 -2.0 1,026,946 + Dsui_0999 0.23 -0.2 1,027,019 + Dsui_0999 0.31 -1.4 1,027,121 + Dsui_0999 0.42 +0.5 1,027,124 - -0.0 1,027,159 + +0.4 1,027,247 - Dsui_0999 0.55 -1.9 1,027,426 + Dsui_0999 0.75 -1.6 1,027,462 + Dsui_0999 0.79 +0.1 1,027,468 + Dsui_0999 0.79 -1.4 1,027,472 + Dsui_0999 0.80 +0.1 1,027,488 + Dsui_0999 0.81 -1.5 1,027,491 - +2.0 1,027,530 - +2.0 1,027,560 + Dsui_0999 0.89 -0.4 1,027,562 - +1.0 1,027,630 + -0.0 1,027,850 + Dsui_1000 0.15 +0.6 1,027,949 + Dsui_1000 0.22 +0.0 1,027,956 + Dsui_1000 0.23 +0.6 1,028,249 - -0.6 1,028,431 - Dsui_1000 0.59 -0.2 1,028,441 - +1.0 1,028,450 + +1.0 1,028,577 - +1.0 1,028,602 - +1.0
Or see this region's nucleotide sequence