Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0679 and Dsui_0680 are separated by 3 nucleotides Dsui_0680 and Dsui_0681 are separated by 29 nucleotides Dsui_0681 and Dsui_0682 are separated by 161 nucleotides Dsui_0682 and Dsui_0683 are separated by 161 nucleotides
Dsui_0679: Dsui_0679 - uncharacterized protein SCO1/SenC/PrrC, at 677,124 to 677,798
_0679
Dsui_0680: Dsui_0680 - short-chain dehydrogenase of unknown substrate specificity, at 677,802 to 678,533
_0680
Dsui_0681: Dsui_0681 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 678,563 to 679,372
_0681
Dsui_0682: Dsui_0682 - 5,10-methenyltetrahydrofolate synthetase, at 679,534 to 680,127
_0682
Dsui_0683: Dsui_0683 - soluble lytic murein transglycosylase-like protein, at 680,289 to 682,277
_0683
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 677.610 kb on + strand, within Dsui_0679 at 677.623 kb on - strand, within Dsui_0679 at 677.839 kb on + strand at 677.877 kb on - strand, within Dsui_0680 at 677.894 kb on + strand, within Dsui_0680 at 677.927 kb on + strand, within Dsui_0680 at 677.930 kb on - strand, within Dsui_0680 at 678.075 kb on - strand, within Dsui_0680 at 678.216 kb on - strand, within Dsui_0680 at 678.392 kb on + strand, within Dsui_0680 at 678.445 kb on - strand, within Dsui_0680 at 678.477 kb on + strand at 678.541 kb on + strand at 678.732 kb on - strand at 678.766 kb on + strand, within Dsui_0681 at 678.859 kb on - strand, within Dsui_0681 at 678.885 kb on + strand, within Dsui_0681 at 678.892 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.236 kb on + strand, within Dsui_0681 at 679.236 kb on + strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.280 kb on - strand, within Dsui_0681 at 679.331 kb on + strand at 679.339 kb on - strand at 680.121 kb on - strand at 680.173 kb on + strand at 680.181 kb on - strand at 680.186 kb on - strand at 680.254 kb on + strand at 680.257 kb on - strand at 680.299 kb on + strand at 680.306 kb on - strand at 680.338 kb on + strand at 680.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 677,610 + Dsui_0679 0.72 -1.3 677,623 - Dsui_0679 0.74 -1.5 677,839 + +0.3 677,877 - Dsui_0680 0.10 +0.7 677,894 + Dsui_0680 0.13 +0.2 677,927 + Dsui_0680 0.17 -0.9 677,930 - Dsui_0680 0.17 +0.3 678,075 - Dsui_0680 0.37 -0.4 678,216 - Dsui_0680 0.57 +1.1 678,392 + Dsui_0680 0.81 -0.5 678,445 - Dsui_0680 0.88 -0.5 678,477 + -0.6 678,541 + +0.8 678,732 - -0.1 678,766 + Dsui_0681 0.25 -1.9 678,859 - Dsui_0681 0.37 +0.5 678,885 + Dsui_0681 0.40 -0.1 678,892 + Dsui_0681 0.41 +0.6 679,210 + Dsui_0681 0.80 +1.0 679,210 + Dsui_0681 0.80 +0.1 679,210 + Dsui_0681 0.80 +0.4 679,236 + Dsui_0681 0.83 -0.2 679,236 + Dsui_0681 0.83 +0.9 679,244 - Dsui_0681 0.84 +0.1 679,244 - Dsui_0681 0.84 -0.3 679,244 - Dsui_0681 0.84 -0.3 679,280 - Dsui_0681 0.89 +0.4 679,331 + +0.0 679,339 - +0.7 680,121 - -0.2 680,173 + -0.5 680,181 - -0.5 680,186 - -1.4 680,254 + +0.5 680,257 - +0.2 680,299 + +0.0 680,306 - -0.3 680,338 + +0.3 680,346 - +0.7
Or see this region's nucleotide sequence