Strain Fitness in Dechlorosoma suillum PS around Dsui_0679

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0677 and Dsui_0678 are separated by 129 nucleotidesDsui_0678 and Dsui_0679 are separated by 2 nucleotidesDsui_0679 and Dsui_0680 are separated by 3 nucleotidesDsui_0680 and Dsui_0681 are separated by 29 nucleotides Dsui_0677: Dsui_0677 - hypothetical protein, at 675,814 to 676,635 _0677 Dsui_0678: Dsui_0678 - hypothetical protein, at 676,765 to 677,121 _0678 Dsui_0679: Dsui_0679 - uncharacterized protein SCO1/SenC/PrrC, at 677,124 to 677,798 _0679 Dsui_0680: Dsui_0680 - short-chain dehydrogenase of unknown substrate specificity, at 677,802 to 678,533 _0680 Dsui_0681: Dsui_0681 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 678,563 to 679,372 _0681 Position (kb) 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 676.258 kb on + strandat 676.280 kb on + strand, within Dsui_0677at 676.280 kb on - strand, within Dsui_0677at 676.302 kb on - strand, within Dsui_0677at 676.620 kb on + strandat 676.645 kb on - strandat 676.715 kb on + strandat 676.723 kb on - strandat 676.723 kb on - strandat 676.772 kb on + strandat 676.772 kb on + strandat 676.772 kb on + strandat 676.780 kb on - strandat 676.780 kb on - strandat 676.780 kb on - strandat 676.861 kb on - strand, within Dsui_0678at 676.875 kb on - strand, within Dsui_0678at 676.891 kb on + strand, within Dsui_0678at 676.899 kb on - strand, within Dsui_0678at 676.934 kb on - strand, within Dsui_0678at 677.042 kb on + strand, within Dsui_0678at 677.291 kb on + strand, within Dsui_0679at 677.377 kb on + strand, within Dsui_0679at 677.404 kb on + strand, within Dsui_0679at 677.412 kb on - strand, within Dsui_0679at 677.468 kb on + strand, within Dsui_0679at 677.492 kb on - strand, within Dsui_0679at 677.529 kb on - strand, within Dsui_0679at 677.610 kb on + strand, within Dsui_0679at 677.623 kb on - strand, within Dsui_0679at 677.839 kb on + strandat 677.877 kb on - strand, within Dsui_0680at 677.894 kb on + strand, within Dsui_0680at 677.927 kb on + strand, within Dsui_0680at 677.930 kb on - strand, within Dsui_0680at 678.075 kb on - strand, within Dsui_0680at 678.216 kb on - strand, within Dsui_0680at 678.392 kb on + strand, within Dsui_0680at 678.445 kb on - strand, within Dsui_0680at 678.477 kb on + strandat 678.541 kb on + strandat 678.732 kb on - strandat 678.766 kb on + strand, within Dsui_0681

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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676,258 + +2.3
676,280 + Dsui_0677 0.57 -0.9
676,280 - Dsui_0677 0.57 +0.5
676,302 - Dsui_0677 0.59 -0.1
676,620 + -1.1
676,645 - -0.2
676,715 + +1.9
676,723 - +0.4
676,723 - +0.9
676,772 + +0.3
676,772 + -0.5
676,772 + +0.3
676,780 - +0.1
676,780 - -0.0
676,780 - +0.9
676,861 - Dsui_0678 0.27 -0.2
676,875 - Dsui_0678 0.31 -0.5
676,891 + Dsui_0678 0.35 +0.6
676,899 - Dsui_0678 0.38 +0.1
676,934 - Dsui_0678 0.47 -1.5
677,042 + Dsui_0678 0.78 -0.8
677,291 + Dsui_0679 0.25 -0.4
677,377 + Dsui_0679 0.37 -1.1
677,404 + Dsui_0679 0.41 -1.0
677,412 - Dsui_0679 0.43 -0.9
677,468 + Dsui_0679 0.51 -0.3
677,492 - Dsui_0679 0.55 -1.0
677,529 - Dsui_0679 0.60 -0.3
677,610 + Dsui_0679 0.72 -1.3
677,623 - Dsui_0679 0.74 -1.5
677,839 + +0.3
677,877 - Dsui_0680 0.10 +0.7
677,894 + Dsui_0680 0.13 +0.2
677,927 + Dsui_0680 0.17 -0.9
677,930 - Dsui_0680 0.17 +0.3
678,075 - Dsui_0680 0.37 -0.4
678,216 - Dsui_0680 0.57 +1.1
678,392 + Dsui_0680 0.81 -0.5
678,445 - Dsui_0680 0.88 -0.5
678,477 + -0.6
678,541 + +0.8
678,732 - -0.1
678,766 + Dsui_0681 0.25 -1.9

Or see this region's nucleotide sequence