Strain Fitness in Dechlorosoma suillum PS around Dsui_0636

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0635 and Dsui_0636 are separated by 74 nucleotidesDsui_0636 and Dsui_0637 are separated by 3 nucleotidesDsui_0637 and Dsui_0638 overlap by 4 nucleotides Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385 _0635 Dsui_0636: Dsui_0636 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 630,460 to 631,197 _0636 Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875 _0637 Dsui_0638: Dsui_0638 - ABC-type polar amino acid transport system, ATPase component, at 631,872 to 632,600 _0638 Position (kb) 630 631 632Strain fitness (log2 ratio) -1 0 1at 629.462 kb on + strandat 629.467 kb on + strandat 629.503 kb on - strandat 629.503 kb on - strandat 629.552 kb on - strandat 629.571 kb on + strandat 629.579 kb on - strand, within Dsui_0635at 629.598 kb on + strand, within Dsui_0635at 629.604 kb on + strand, within Dsui_0635at 629.611 kb on - strand, within Dsui_0635at 629.679 kb on + strand, within Dsui_0635at 629.728 kb on - strand, within Dsui_0635at 629.792 kb on + strand, within Dsui_0635at 629.806 kb on - strandat 629.808 kb on - strand, within Dsui_0635at 629.896 kb on + strand, within Dsui_0635at 630.095 kb on + strand, within Dsui_0635at 630.108 kb on - strand, within Dsui_0635at 630.121 kb on + strand, within Dsui_0635at 630.121 kb on + strand, within Dsui_0635at 630.135 kb on - strand, within Dsui_0635at 630.171 kb on - strand, within Dsui_0635at 630.173 kb on + strand, within Dsui_0635at 630.173 kb on + strand, within Dsui_0635at 630.230 kb on + strand, within Dsui_0635at 630.241 kb on + strand, within Dsui_0635at 630.257 kb on - strand, within Dsui_0635at 630.276 kb on - strand, within Dsui_0635at 630.382 kb on - strandat 630.494 kb on + strandat 630.494 kb on + strandat 630.497 kb on - strandat 630.529 kb on - strandat 630.531 kb on + strandat 630.531 kb on + strandat 630.554 kb on - strand, within Dsui_0636at 630.554 kb on - strand, within Dsui_0636at 630.599 kb on - strand, within Dsui_0636at 630.663 kb on + strand, within Dsui_0636at 630.671 kb on - strand, within Dsui_0636at 630.688 kb on + strand, within Dsui_0636at 630.745 kb on - strand, within Dsui_0636at 630.809 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.816 kb on + strand, within Dsui_0636at 630.874 kb on + strand, within Dsui_0636at 630.895 kb on + strand, within Dsui_0636at 630.915 kb on - strand, within Dsui_0636at 630.927 kb on - strand, within Dsui_0636at 631.080 kb on - strand, within Dsui_0636at 631.085 kb on - strand, within Dsui_0636at 631.097 kb on + strand, within Dsui_0636at 631.126 kb on - strandat 631.186 kb on - strandat 631.268 kb on + strandat 631.386 kb on + strand, within Dsui_0637at 631.452 kb on - strand, within Dsui_0637at 631.497 kb on - strand, within Dsui_0637at 631.504 kb on + strand, within Dsui_0637at 631.515 kb on + strand, within Dsui_0637at 631.523 kb on - strand, within Dsui_0637at 631.586 kb on - strand, within Dsui_0637at 631.638 kb on + strand, within Dsui_0637at 631.646 kb on - strand, within Dsui_0637at 631.647 kb on - strand, within Dsui_0637at 631.682 kb on + strand, within Dsui_0637at 631.917 kb on - strandat 631.941 kb on - strandat 631.962 kb on - strand, within Dsui_0638at 631.990 kb on + strand, within Dsui_0638at 631.998 kb on - strand, within Dsui_0638at 632.000 kb on + strand, within Dsui_0638at 632.026 kb on + strand, within Dsui_0638at 632.104 kb on - strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.184 kb on + strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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629,462 + +0.4
629,467 + +0.3
629,503 - -0.1
629,503 - +0.2
629,552 - +0.0
629,571 + +0.4
629,579 - Dsui_0635 0.10 -0.2
629,598 + Dsui_0635 0.12 +0.4
629,604 + Dsui_0635 0.13 +0.5
629,611 - Dsui_0635 0.14 +0.8
629,679 + Dsui_0635 0.21 +1.3
629,728 - Dsui_0635 0.27 -0.7
629,792 + Dsui_0635 0.34 +0.4
629,806 - +0.9
629,808 - Dsui_0635 0.36 -0.0
629,896 + Dsui_0635 0.46 -0.3
630,095 + Dsui_0635 0.68 +0.3
630,108 - Dsui_0635 0.69 -0.0
630,121 + Dsui_0635 0.71 +0.1
630,121 + Dsui_0635 0.71 +0.2
630,135 - Dsui_0635 0.72 +0.7
630,171 - Dsui_0635 0.76 -0.7
630,173 + Dsui_0635 0.76 +0.1
630,173 + Dsui_0635 0.76 +0.4
630,230 + Dsui_0635 0.83 +0.4
630,241 + Dsui_0635 0.84 +0.6
630,257 - Dsui_0635 0.86 -1.0
630,276 - Dsui_0635 0.88 +0.7
630,382 - +0.5
630,494 + +0.6
630,494 + +0.7
630,497 - +1.0
630,529 - +0.4
630,531 + +0.1
630,531 + +0.2
630,554 - Dsui_0636 0.13 +0.6
630,554 - Dsui_0636 0.13 +0.7
630,599 - Dsui_0636 0.19 -0.3
630,663 + Dsui_0636 0.28 +0.1
630,671 - Dsui_0636 0.29 -0.2
630,688 + Dsui_0636 0.31 +0.3
630,745 - Dsui_0636 0.39 +0.3
630,809 - Dsui_0636 0.47 -0.0
630,814 - Dsui_0636 0.48 +0.0
630,814 - Dsui_0636 0.48 -0.5
630,816 + Dsui_0636 0.48 +0.0
630,874 + Dsui_0636 0.56 +0.4
630,895 + Dsui_0636 0.59 -0.0
630,915 - Dsui_0636 0.62 +0.3
630,927 - Dsui_0636 0.63 +0.4
631,080 - Dsui_0636 0.84 +0.6
631,085 - Dsui_0636 0.85 +0.6
631,097 + Dsui_0636 0.86 +0.2
631,126 - +0.9
631,186 - +0.2
631,268 + -0.1
631,386 + Dsui_0637 0.27 +0.3
631,452 - Dsui_0637 0.37 +0.6
631,497 - Dsui_0637 0.44 +0.5
631,504 + Dsui_0637 0.45 +1.1
631,515 + Dsui_0637 0.47 +0.3
631,523 - Dsui_0637 0.48 +0.5
631,586 - Dsui_0637 0.57 +0.3
631,638 + Dsui_0637 0.65 +0.2
631,646 - Dsui_0637 0.66 -0.1
631,647 - Dsui_0637 0.66 +0.5
631,682 + Dsui_0637 0.71 +0.1
631,917 - -1.5
631,941 - +0.3
631,962 - Dsui_0638 0.12 +0.4
631,990 + Dsui_0638 0.16 +0.1
631,998 - Dsui_0638 0.17 -1.3
632,000 + Dsui_0638 0.18 +0.3
632,026 + Dsui_0638 0.21 +0.0
632,104 - Dsui_0638 0.32 -0.3
632,177 + Dsui_0638 0.42 +0.1
632,177 + Dsui_0638 0.42 +0.5
632,184 + Dsui_0638 0.43 +0.4
632,185 - Dsui_0638 0.43 -0.6
632,185 - Dsui_0638 0.43 +0.8

Or see this region's nucleotide sequence