Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0589 and Dsui_0590 are separated by 8 nucleotides Dsui_0590 and Dsui_0591 are separated by 91 nucleotides Dsui_0591 and Dsui_0592 are separated by 155 nucleotides
Dsui_0589: Dsui_0589 - putative GTPase, G3E family, at 586,512 to 587,507
_0589
Dsui_0590: Dsui_0590 - Fe2+/Zn2+ uptake regulation protein, at 587,516 to 587,956
_0590
Dsui_0591: Dsui_0591 - deoxyribodipyrimidine photolyase, at 588,048 to 589,496
_0591
Dsui_0592: Dsui_0592 - putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon, at 589,652 to 591,292
_0592
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.109 kb on - strand, within Dsui_0589 at 587.119 kb on - strand, within Dsui_0589 at 587.144 kb on - strand, within Dsui_0589 at 587.166 kb on + strand at 587.203 kb on + strand, within Dsui_0589 at 587.280 kb on - strand, within Dsui_0589 at 587.301 kb on - strand, within Dsui_0589 at 587.366 kb on - strand, within Dsui_0589 at 587.431 kb on - strand at 587.500 kb on - strand at 587.540 kb on - strand at 587.596 kb on + strand, within Dsui_0590 at 588.073 kb on + strand at 588.121 kb on + strand at 588.137 kb on - strand at 588.198 kb on + strand at 588.216 kb on - strand, within Dsui_0591 at 588.504 kb on - strand, within Dsui_0591 at 588.650 kb on - strand, within Dsui_0591 at 588.675 kb on - strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.794 kb on - strand, within Dsui_0591 at 588.892 kb on + strand at 588.892 kb on + strand at 589.053 kb on + strand at 589.118 kb on + strand, within Dsui_0591 at 589.290 kb on + strand, within Dsui_0591 at 589.516 kb on - strand at 589.530 kb on - strand at 589.565 kb on + strand at 589.565 kb on + strand at 589.588 kb on + strand at 589.629 kb on + strand at 589.629 kb on + strand at 589.637 kb on - strand at 589.637 kb on - strand at 589.692 kb on + strand at 589.700 kb on - strand at 589.700 kb on - strand at 589.751 kb on - strand at 589.751 kb on - strand at 589.815 kb on + strand at 589.888 kb on + strand, within Dsui_0592 at 590.046 kb on + strand, within Dsui_0592 at 590.048 kb on - strand, within Dsui_0592 at 590.060 kb on - strand, within Dsui_0592 at 590.191 kb on - strand, within Dsui_0592 at 590.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 587,109 - Dsui_0589 0.60 +0.7 587,119 - Dsui_0589 0.61 -0.2 587,144 - Dsui_0589 0.63 +0.5 587,166 + +1.0 587,203 + Dsui_0589 0.69 -0.4 587,280 - Dsui_0589 0.77 +0.7 587,301 - Dsui_0589 0.79 +1.6 587,366 - Dsui_0589 0.86 +0.5 587,431 - +1.0 587,500 - +0.4 587,540 - +0.0 587,596 + Dsui_0590 0.18 -0.0 588,073 + -0.4 588,121 + -2.4 588,137 - -0.1 588,198 + +0.5 588,216 - Dsui_0591 0.12 -0.4 588,504 - Dsui_0591 0.31 +0.5 588,650 - Dsui_0591 0.42 -0.0 588,675 - Dsui_0591 0.43 +0.2 588,764 + Dsui_0591 0.49 +1.4 588,764 + Dsui_0591 0.49 +0.2 588,764 + Dsui_0591 0.49 -0.5 588,794 - Dsui_0591 0.51 -0.4 588,892 + -0.4 588,892 + +2.4 589,053 + -0.0 589,118 + Dsui_0591 0.74 +1.0 589,290 + Dsui_0591 0.86 +0.7 589,516 - -0.3 589,530 - -0.2 589,565 + -0.6 589,565 + +0.7 589,588 + -0.9 589,629 + -0.5 589,629 + -0.4 589,637 - -0.5 589,637 - -1.9 589,692 + +0.1 589,700 - +1.1 589,700 - -0.6 589,751 - -0.5 589,751 - -0.9 589,815 + -0.1 589,888 + Dsui_0592 0.14 +0.4 590,046 + Dsui_0592 0.24 +0.2 590,048 - Dsui_0592 0.24 +0.6 590,060 - Dsui_0592 0.25 -0.4 590,191 - Dsui_0592 0.33 +0.5 590,195 - +2.0
Or see this region's nucleotide sequence