Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0580 and Dsui_0581 are separated by 7 nucleotides Dsui_0581 and Dsui_0582 are separated by 74 nucleotides Dsui_0582 and Dsui_0583 are separated by 76 nucleotides Dsui_0583 and Dsui_0584 overlap by 4 nucleotides
Dsui_0580: Dsui_0580 - ATP-dependent protease HslVU, ATPase subunit, at 577,832 to 579,169
_0580
Dsui_0581: Dsui_0581 - ATP-dependent protease HslVU, peptidase subunit, at 579,177 to 579,713
_0581
Dsui_0582: Dsui_0582 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 579,788 to 581,017
_0582
Dsui_0583: Dsui_0583 - ABC-type Mn2+/Zn2+ transport system, permease component, at 581,094 to 581,912
_0583
Dsui_0584: Dsui_0584 - ATPase component of Mn/Zn ABC-type transporter, at 581,909 to 582,502
_0584
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -1
0
1
2 at 578.890 kb on + strand, within Dsui_0580 at 578.900 kb on + strand, within Dsui_0580 at 579.053 kb on - strand at 579.102 kb on + strand at 579.279 kb on - strand, within Dsui_0581 at 579.519 kb on - strand, within Dsui_0581 at 579.538 kb on - strand, within Dsui_0581 at 579.580 kb on + strand, within Dsui_0581 at 579.598 kb on - strand, within Dsui_0581 at 579.640 kb on - strand, within Dsui_0581 at 579.686 kb on + strand at 579.707 kb on + strand at 580.134 kb on - strand, within Dsui_0582 at 580.168 kb on - strand, within Dsui_0582 at 580.389 kb on + strand at 580.389 kb on + strand at 580.397 kb on - strand, within Dsui_0582 at 580.590 kb on - strand, within Dsui_0582 at 580.746 kb on - strand, within Dsui_0582 at 580.758 kb on + strand at 580.767 kb on - strand, within Dsui_0582 at 580.875 kb on + strand, within Dsui_0582 at 580.883 kb on - strand, within Dsui_0582 at 580.975 kb on + strand at 580.984 kb on - strand at 580.992 kb on - strand at 581.053 kb on + strand at 581.061 kb on - strand at 581.067 kb on + strand at 581.069 kb on - strand at 581.168 kb on + strand at 581.171 kb on - strand at 581.196 kb on - strand, within Dsui_0583 at 581.320 kb on - strand, within Dsui_0583 at 581.390 kb on - strand, within Dsui_0583 at 581.417 kb on - strand, within Dsui_0583 at 581.469 kb on + strand at 581.555 kb on - strand, within Dsui_0583 at 581.609 kb on + strand at 581.744 kb on - strand, within Dsui_0583 at 581.827 kb on - strand, within Dsui_0583 at 581.921 kb on - strand at 581.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 578,890 + Dsui_0580 0.79 -0.0 578,900 + Dsui_0580 0.80 -0.4 579,053 - -1.0 579,102 + +1.0 579,279 - Dsui_0581 0.19 -0.7 579,519 - Dsui_0581 0.64 +1.0 579,538 - Dsui_0581 0.67 +0.2 579,580 + Dsui_0581 0.75 -0.4 579,598 - Dsui_0581 0.78 -0.5 579,640 - Dsui_0581 0.86 -0.9 579,686 + -1.0 579,707 + +0.1 580,134 - Dsui_0582 0.28 +0.1 580,168 - Dsui_0582 0.31 +2.1 580,389 + -0.4 580,389 + +1.0 580,397 - Dsui_0582 0.50 -0.0 580,590 - Dsui_0582 0.65 -0.1 580,746 - Dsui_0582 0.78 -0.4 580,758 + +2.0 580,767 - Dsui_0582 0.80 +0.6 580,875 + Dsui_0582 0.88 +0.4 580,883 - Dsui_0582 0.89 -0.3 580,975 + +1.4 580,984 - -0.4 580,992 - +1.2 581,053 + +0.1 581,061 - -1.0 581,067 + +1.1 581,069 - +1.0 581,168 + +0.4 581,171 - -0.4 581,196 - Dsui_0583 0.12 +1.0 581,320 - Dsui_0583 0.28 -0.7 581,390 - Dsui_0583 0.36 +0.1 581,417 - Dsui_0583 0.39 -0.0 581,469 + +0.6 581,555 - Dsui_0583 0.56 -1.1 581,609 + -0.0 581,744 - Dsui_0583 0.79 +0.5 581,827 - Dsui_0583 0.89 -0.0 581,921 - -0.4 581,984 - -0.0
Or see this region's nucleotide sequence