Strain Fitness in Dechlorosoma suillum PS around Dsui_0577

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0575 and Dsui_0576 are separated by 21 nucleotidesDsui_0576 and Dsui_0577 overlap by 8 nucleotidesDsui_0577 and Dsui_0578 are separated by 14 nucleotides Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273 _0575 Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140 _0576 Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465 _0577 Dsui_0578: Dsui_0578 - homocitrate synthase NifV, at 575,480 to 576,634 _0578 Position (kb) 575 576Strain fitness (log2 ratio) -1 0 1at 574.155 kb on - strand, within Dsui_0575at 574.202 kb on - strandat 574.273 kb on + strandat 574.283 kb on + strandat 574.301 kb on - strandat 574.341 kb on + strandat 574.344 kb on - strandat 574.349 kb on - strandat 574.360 kb on - strandat 574.362 kb on + strandat 574.461 kb on - strand, within Dsui_0576at 574.519 kb on + strand, within Dsui_0576at 574.591 kb on - strand, within Dsui_0576at 574.592 kb on - strand, within Dsui_0576at 575.106 kb on + strandat 575.116 kb on + strandat 575.124 kb on - strandat 575.135 kb on + strandat 575.150 kb on + strandat 575.150 kb on + strandat 575.195 kb on - strand, within Dsui_0577at 575.329 kb on + strand, within Dsui_0577at 575.348 kb on + strand, within Dsui_0577at 575.348 kb on + strand, within Dsui_0577at 575.467 kb on + strandat 575.470 kb on - strandat 575.556 kb on - strandat 575.578 kb on - strandat 575.604 kb on - strand, within Dsui_0578at 575.628 kb on - strand, within Dsui_0578at 575.706 kb on + strand, within Dsui_0578at 575.962 kb on + strand, within Dsui_0578at 575.977 kb on - strand, within Dsui_0578at 575.982 kb on + strand, within Dsui_0578at 575.990 kb on - strand, within Dsui_0578at 576.216 kb on - strand, within Dsui_0578at 576.271 kb on - strand, within Dsui_0578at 576.399 kb on - strand, within Dsui_0578at 576.424 kb on + strand, within Dsui_0578at 576.431 kb on - strand, within Dsui_0578at 576.450 kb on - strand, within Dsui_0578

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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574,155 - Dsui_0575 0.89 +0.4
574,202 - -0.4
574,273 + -0.6
574,283 + -0.6
574,301 - +0.3
574,341 + +0.4
574,344 - -0.4
574,349 - +1.1
574,360 - -0.9
574,362 + +0.4
574,461 - Dsui_0576 0.20 +0.4
574,519 + Dsui_0576 0.26 -0.1
574,591 - Dsui_0576 0.35 +0.3
574,592 - Dsui_0576 0.35 -0.7
575,106 + +0.6
575,116 + +0.0
575,124 - -0.0
575,135 + -0.4
575,150 + -0.0
575,150 + +0.7
575,195 - Dsui_0577 0.19 -0.5
575,329 + Dsui_0577 0.59 +0.5
575,348 + Dsui_0577 0.65 +0.2
575,348 + Dsui_0577 0.65 +0.9
575,467 + -0.0
575,470 - -0.4
575,556 - +0.1
575,578 - -0.7
575,604 - Dsui_0578 0.11 +0.3
575,628 - Dsui_0578 0.13 +1.0
575,706 + Dsui_0578 0.20 +0.1
575,962 + Dsui_0578 0.42 +0.2
575,977 - Dsui_0578 0.43 +1.0
575,982 + Dsui_0578 0.43 -0.3
575,990 - Dsui_0578 0.44 +0.3
576,216 - Dsui_0578 0.64 +0.1
576,271 - Dsui_0578 0.68 -0.1
576,399 - Dsui_0578 0.80 +0.4
576,424 + Dsui_0578 0.82 +0.1
576,431 - Dsui_0578 0.82 +0.2
576,450 - Dsui_0578 0.84 -0.2

Or see this region's nucleotide sequence