Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0509 and Dsui_0510 overlap by 4 nucleotides Dsui_0510 and Dsui_0511 are separated by 10 nucleotides Dsui_0511 and Dsui_0512 are separated by 318 nucleotides
Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664
_0509
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Dsui_0512: Dsui_0512 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) <small>(from data)</small>, at 516,387 to 516,863
_0512
Position (kb) 514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2 at 513.786 kb on + strand, within Dsui_0509 at 513.963 kb on + strand, within Dsui_0509 at 513.999 kb on - strand, within Dsui_0509 at 514.085 kb on + strand, within Dsui_0509 at 514.095 kb on + strand, within Dsui_0509 at 514.098 kb on - strand, within Dsui_0509 at 514.103 kb on - strand at 514.109 kb on + strand, within Dsui_0509 at 514.166 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.214 kb on + strand, within Dsui_0509 at 514.263 kb on - strand, within Dsui_0509 at 514.363 kb on - strand at 514.425 kb on - strand, within Dsui_0509 at 514.456 kb on - strand, within Dsui_0509 at 514.474 kb on + strand at 514.549 kb on + strand, within Dsui_0509 at 514.585 kb on + strand at 514.827 kb on - strand at 514.840 kb on - strand at 514.854 kb on - strand, within Dsui_0510 at 514.905 kb on + strand, within Dsui_0510 at 514.971 kb on + strand, within Dsui_0510 at 515.041 kb on - strand, within Dsui_0510 at 515.124 kb on + strand, within Dsui_0510 at 515.125 kb on - strand at 515.162 kb on + strand, within Dsui_0510 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand at 515.770 kb on + strand, within Dsui_0511 at 515.778 kb on - strand, within Dsui_0511 at 515.868 kb on - strand, within Dsui_0511 at 515.957 kb on + strand, within Dsui_0511 at 516.055 kb on - strand at 516.062 kb on + strand at 516.070 kb on - strand at 516.391 kb on - strand at 516.391 kb on - strand at 516.415 kb on + strand at 516.425 kb on - strand at 516.455 kb on + strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.533 kb on + strand, within Dsui_0512 at 516.555 kb on + strand, within Dsui_0512
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 513,786 + Dsui_0509 0.10 -2.7 513,963 + Dsui_0509 0.28 -1.4 513,999 - Dsui_0509 0.32 -0.1 514,085 + Dsui_0509 0.41 -1.5 514,095 + Dsui_0509 0.42 -0.4 514,098 - Dsui_0509 0.42 -0.9 514,103 - +1.9 514,109 + Dsui_0509 0.43 -1.1 514,166 + Dsui_0509 0.49 -1.1 514,195 + Dsui_0509 0.52 -0.7 514,195 + Dsui_0509 0.52 -1.5 514,203 - Dsui_0509 0.53 -0.7 514,203 - Dsui_0509 0.53 -2.3 514,214 + Dsui_0509 0.54 -0.8 514,263 - Dsui_0509 0.59 -2.7 514,363 - +0.3 514,425 - Dsui_0509 0.76 -0.7 514,456 - Dsui_0509 0.79 -1.3 514,474 + +0.3 514,549 + Dsui_0509 0.88 -0.5 514,585 + -1.1 514,827 - +1.9 514,840 - +0.9 514,854 - Dsui_0510 0.21 -1.1 514,905 + Dsui_0510 0.26 -1.0 514,971 + Dsui_0510 0.34 -1.5 515,041 - Dsui_0510 0.41 -2.4 515,124 + Dsui_0510 0.50 -1.6 515,125 - +0.3 515,162 + Dsui_0510 0.54 -1.2 515,516 + -0.9 515,558 + -1.3 515,615 - -0.4 515,770 + Dsui_0511 0.37 +0.9 515,778 - Dsui_0511 0.39 -2.1 515,868 - Dsui_0511 0.58 -2.0 515,957 + Dsui_0511 0.77 -1.5 516,055 - +0.1 516,062 + -0.3 516,070 - +0.0 516,391 - -0.4 516,391 - -1.9 516,415 + -1.4 516,425 - +0.9 516,455 + Dsui_0512 0.14 -0.5 516,463 - Dsui_0512 0.16 +0.7 516,463 - Dsui_0512 0.16 +0.7 516,533 + Dsui_0512 0.31 +0.3 516,555 + Dsui_0512 0.35 +0.6
Or see this region's nucleotide sequence