Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0508 and Dsui_0509 are separated by 89 nucleotides Dsui_0509 and Dsui_0510 overlap by 4 nucleotides Dsui_0510 and Dsui_0511 are separated by 10 nucleotides
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664
_0509
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Position (kb) 513
514
515 Strain fitness (log2 ratio) -2
-1
0
1
2 at 512.751 kb on + strand, within Dsui_0508 at 512.764 kb on + strand, within Dsui_0508 at 512.764 kb on + strand, within Dsui_0508 at 512.772 kb on - strand, within Dsui_0508 at 512.868 kb on + strand, within Dsui_0508 at 512.900 kb on + strand, within Dsui_0508 at 512.924 kb on + strand, within Dsui_0508 at 512.934 kb on + strand, within Dsui_0508 at 512.942 kb on - strand at 512.942 kb on - strand, within Dsui_0508 at 512.942 kb on - strand at 512.973 kb on - strand, within Dsui_0508 at 513.085 kb on + strand, within Dsui_0508 at 513.132 kb on - strand, within Dsui_0508 at 513.132 kb on - strand, within Dsui_0508 at 513.138 kb on + strand, within Dsui_0508 at 513.146 kb on - strand, within Dsui_0508 at 513.157 kb on - strand, within Dsui_0508 at 513.238 kb on + strand, within Dsui_0508 at 513.252 kb on + strand, within Dsui_0508 at 513.252 kb on + strand, within Dsui_0508 at 513.260 kb on - strand, within Dsui_0508 at 513.260 kb on - strand, within Dsui_0508 at 513.318 kb on + strand, within Dsui_0508 at 513.326 kb on - strand, within Dsui_0508 at 513.326 kb on - strand, within Dsui_0508 at 513.332 kb on - strand at 513.469 kb on + strand at 513.515 kb on + strand at 513.572 kb on + strand at 513.643 kb on + strand at 513.786 kb on + strand, within Dsui_0509 at 513.963 kb on + strand, within Dsui_0509 at 513.999 kb on - strand, within Dsui_0509 at 514.085 kb on + strand, within Dsui_0509 at 514.095 kb on + strand, within Dsui_0509 at 514.098 kb on - strand, within Dsui_0509 at 514.103 kb on - strand at 514.109 kb on + strand, within Dsui_0509 at 514.166 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.214 kb on + strand, within Dsui_0509 at 514.263 kb on - strand, within Dsui_0509 at 514.363 kb on - strand at 514.425 kb on - strand, within Dsui_0509 at 514.456 kb on - strand, within Dsui_0509 at 514.474 kb on + strand at 514.549 kb on + strand, within Dsui_0509 at 514.585 kb on + strand at 514.827 kb on - strand at 514.840 kb on - strand at 514.854 kb on - strand, within Dsui_0510 at 514.905 kb on + strand, within Dsui_0510 at 514.971 kb on + strand, within Dsui_0510 at 515.041 kb on - strand, within Dsui_0510 at 515.124 kb on + strand, within Dsui_0510 at 515.125 kb on - strand at 515.162 kb on + strand, within Dsui_0510 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 512,751 + Dsui_0508 0.67 -1.9 512,764 + Dsui_0508 0.67 -0.4 512,764 + Dsui_0508 0.67 -1.1 512,772 - Dsui_0508 0.67 -2.4 512,868 + Dsui_0508 0.71 -1.2 512,900 + Dsui_0508 0.72 -1.3 512,924 + Dsui_0508 0.73 -0.9 512,934 + Dsui_0508 0.74 -1.4 512,942 - -0.7 512,942 - Dsui_0508 0.74 -2.4 512,942 - -0.3 512,973 - Dsui_0508 0.75 -2.1 513,085 + Dsui_0508 0.80 -1.7 513,132 - Dsui_0508 0.82 -0.9 513,132 - Dsui_0508 0.82 -1.6 513,138 + Dsui_0508 0.82 -2.6 513,146 - Dsui_0508 0.82 -0.8 513,157 - Dsui_0508 0.83 -1.5 513,238 + Dsui_0508 0.86 -1.8 513,252 + Dsui_0508 0.86 -1.9 513,252 + Dsui_0508 0.86 +0.7 513,260 - Dsui_0508 0.87 -0.1 513,260 - Dsui_0508 0.87 -1.1 513,318 + Dsui_0508 0.89 -0.7 513,326 - Dsui_0508 0.89 -1.7 513,326 - Dsui_0508 0.89 -2.3 513,332 - -0.9 513,469 + -1.0 513,515 + -0.3 513,572 + -0.9 513,643 + -0.1 513,786 + Dsui_0509 0.10 -2.7 513,963 + Dsui_0509 0.28 -1.4 513,999 - Dsui_0509 0.32 -0.1 514,085 + Dsui_0509 0.41 -1.5 514,095 + Dsui_0509 0.42 -0.4 514,098 - Dsui_0509 0.42 -0.9 514,103 - +1.9 514,109 + Dsui_0509 0.43 -1.1 514,166 + Dsui_0509 0.49 -1.1 514,195 + Dsui_0509 0.52 -0.7 514,195 + Dsui_0509 0.52 -1.5 514,203 - Dsui_0509 0.53 -0.7 514,203 - Dsui_0509 0.53 -2.3 514,214 + Dsui_0509 0.54 -0.8 514,263 - Dsui_0509 0.59 -2.7 514,363 - +0.3 514,425 - Dsui_0509 0.76 -0.7 514,456 - Dsui_0509 0.79 -1.3 514,474 + +0.3 514,549 + Dsui_0509 0.88 -0.5 514,585 + -1.1 514,827 - +1.9 514,840 - +0.9 514,854 - Dsui_0510 0.21 -1.1 514,905 + Dsui_0510 0.26 -1.0 514,971 + Dsui_0510 0.34 -1.5 515,041 - Dsui_0510 0.41 -2.4 515,124 + Dsui_0510 0.50 -1.6 515,125 - +0.3 515,162 + Dsui_0510 0.54 -1.2 515,516 + -0.9 515,558 + -1.3 515,615 - -0.4
Or see this region's nucleotide sequence