Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0437 and Dsui_0438 are separated by 51 nucleotides Dsui_0438 and Dsui_0439 are separated by 45 nucleotides
Dsui_0437: Dsui_0437 - succinate-semialdehyde dehydrogenase, at 444,009 to 445,460
_0437
Dsui_0438: Dsui_0438 - cell wall-associated hydrolase, invasion-associated protein, at 445,512 to 446,003
_0438
Dsui_0439: Dsui_0439 - 2-nitropropane dioxygenase-like enzyme, at 446,049 to 446,996
_0439
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.523 kb on - strand, within Dsui_0437 at 444.523 kb on - strand, within Dsui_0437 at 444.523 kb on - strand, within Dsui_0437 at 444.603 kb on + strand, within Dsui_0437 at 444.901 kb on - strand, within Dsui_0437 at 444.925 kb on - strand, within Dsui_0437 at 444.930 kb on + strand, within Dsui_0437 at 444.962 kb on + strand at 445.084 kb on + strand at 445.092 kb on - strand, within Dsui_0437 at 445.127 kb on + strand at 445.140 kb on - strand, within Dsui_0437 at 445.173 kb on - strand, within Dsui_0437 at 445.191 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.247 kb on - strand, within Dsui_0437 at 445.272 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.439 kb on + strand at 445.602 kb on - strand, within Dsui_0438 at 445.715 kb on - strand, within Dsui_0438 at 445.727 kb on + strand, within Dsui_0438 at 445.833 kb on + strand, within Dsui_0438 at 445.973 kb on + strand at 445.973 kb on + strand at 445.973 kb on + strand at 445.988 kb on + strand at 446.080 kb on - strand at 446.130 kb on - strand at 446.150 kb on + strand, within Dsui_0439 at 446.201 kb on + strand, within Dsui_0439 at 446.247 kb on + strand, within Dsui_0439 at 446.278 kb on - strand at 446.331 kb on - strand, within Dsui_0439 at 446.362 kb on - strand at 446.372 kb on + strand, within Dsui_0439 at 446.380 kb on - strand, within Dsui_0439 at 446.462 kb on - strand, within Dsui_0439 at 446.679 kb on + strand, within Dsui_0439 at 446.699 kb on - strand, within Dsui_0439 at 446.704 kb on - strand, within Dsui_0439 at 446.972 kb on + strand at 446.972 kb on + strand at 446.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 444,523 - Dsui_0437 0.35 +0.3 444,523 - Dsui_0437 0.35 -0.1 444,523 - Dsui_0437 0.35 +0.0 444,603 + Dsui_0437 0.41 -0.5 444,901 - Dsui_0437 0.61 -0.7 444,925 - Dsui_0437 0.63 +0.1 444,930 + Dsui_0437 0.63 -1.3 444,962 + +0.4 445,084 + +2.0 445,092 - Dsui_0437 0.75 -0.2 445,127 + +2.0 445,140 - Dsui_0437 0.78 -0.7 445,173 - Dsui_0437 0.80 -1.3 445,191 - Dsui_0437 0.81 +0.3 445,201 - Dsui_0437 0.82 -0.0 445,201 - Dsui_0437 0.82 -1.0 445,247 - Dsui_0437 0.85 +0.0 445,272 + -0.6 445,317 + +0.1 445,317 + +0.1 445,317 + +0.7 445,439 + -0.2 445,602 - Dsui_0438 0.18 -1.2 445,715 - Dsui_0438 0.41 -0.7 445,727 + Dsui_0438 0.44 -0.3 445,833 + Dsui_0438 0.65 -0.5 445,973 + -1.7 445,973 + -0.8 445,973 + -0.4 445,988 + -0.7 446,080 - +0.4 446,130 - -0.3 446,150 + Dsui_0439 0.11 +0.8 446,201 + Dsui_0439 0.16 -0.0 446,247 + Dsui_0439 0.21 +0.0 446,278 - +1.0 446,331 - Dsui_0439 0.30 -1.9 446,362 - +2.0 446,372 + Dsui_0439 0.34 -0.2 446,380 - Dsui_0439 0.35 -0.9 446,462 - Dsui_0439 0.44 +0.0 446,679 + Dsui_0439 0.66 +0.0 446,699 - Dsui_0439 0.69 -0.4 446,704 - Dsui_0439 0.69 -0.0 446,972 + -0.2 446,972 + +0.8 446,998 - -0.6
Or see this region's nucleotide sequence