Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0412 and Dsui_0413 are separated by 13 nucleotides Dsui_0413 and Dsui_0414 overlap by 4 nucleotides Dsui_0414 and Dsui_0415 overlap by 4 nucleotides Dsui_0415 and Dsui_0416 overlap by 1 nucleotides
Dsui_0412: Dsui_0412 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 413,293 to 414,246
_0412
Dsui_0413: Dsui_0413 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 414,260 to 415,153
_0413
Dsui_0414: Dsui_0414 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 415,150 to 416,208
_0414
Dsui_0415: Dsui_0415 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 416,205 to 417,185
_0415
Dsui_0416: Dsui_0416 - transcriptional regulator, at 417,185 to 417,922
_0416
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 414.221 kb on - strand at 414.365 kb on + strand at 414.583 kb on - strand at 414.640 kb on - strand at 414.845 kb on + strand, within Dsui_0413 at 414.965 kb on - strand at 415.013 kb on + strand at 415.018 kb on + strand at 415.076 kb on + strand at 415.101 kb on + strand at 415.101 kb on + strand at 415.328 kb on - strand, within Dsui_0414 at 415.434 kb on - strand at 415.457 kb on + strand, within Dsui_0414 at 415.519 kb on - strand, within Dsui_0414 at 415.519 kb on - strand, within Dsui_0414 at 415.519 kb on - strand at 415.520 kb on - strand at 415.533 kb on + strand at 415.534 kb on + strand, within Dsui_0414 at 415.561 kb on - strand, within Dsui_0414 at 415.680 kb on + strand, within Dsui_0414 at 415.759 kb on + strand at 415.767 kb on - strand at 415.791 kb on + strand, within Dsui_0414 at 415.829 kb on + strand at 415.878 kb on - strand, within Dsui_0414 at 415.920 kb on - strand, within Dsui_0414 at 415.954 kb on - strand, within Dsui_0414 at 416.076 kb on + strand, within Dsui_0414 at 416.178 kb on + strand at 416.254 kb on + strand at 416.295 kb on - strand at 416.340 kb on + strand, within Dsui_0415 at 416.345 kb on + strand at 416.431 kb on + strand at 416.446 kb on + strand at 416.519 kb on + strand at 416.701 kb on + strand, within Dsui_0415 at 416.701 kb on + strand at 416.752 kb on - strand at 416.885 kb on + strand, within Dsui_0415 at 416.915 kb on - strand, within Dsui_0415 at 416.929 kb on - strand at 416.956 kb on + strand at 416.956 kb on - strand at 417.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 414,221 - +0.4 414,365 + +2.0 414,583 - -0.0 414,640 - +1.4 414,845 + Dsui_0413 0.65 -0.4 414,965 - +1.4 415,013 + +1.0 415,018 + +0.7 415,076 + -0.0 415,101 + -0.0 415,101 + +1.4 415,328 - Dsui_0414 0.17 -1.2 415,434 - +1.0 415,457 + Dsui_0414 0.29 -0.3 415,519 - Dsui_0414 0.35 -1.2 415,519 - Dsui_0414 0.35 +1.1 415,519 - +1.6 415,520 - -0.6 415,533 + +1.0 415,534 + Dsui_0414 0.36 +0.2 415,561 - Dsui_0414 0.39 +0.7 415,680 + Dsui_0414 0.50 -2.3 415,759 + +1.0 415,767 - +1.6 415,791 + Dsui_0414 0.61 -0.0 415,829 + +1.0 415,878 - Dsui_0414 0.69 -0.6 415,920 - Dsui_0414 0.73 -0.7 415,954 - Dsui_0414 0.76 +1.4 416,076 + Dsui_0414 0.87 +0.3 416,178 + -0.0 416,254 + +0.4 416,295 - +1.1 416,340 + Dsui_0415 0.14 -0.3 416,345 + +2.0 416,431 + +3.0 416,446 + -0.0 416,519 + +1.0 416,701 + Dsui_0415 0.51 -0.7 416,701 + +1.0 416,752 - +1.0 416,885 + Dsui_0415 0.69 -0.8 416,915 - Dsui_0415 0.72 +0.2 416,929 - +1.0 416,956 + +2.0 416,956 - +1.2 417,146 - -0.0
Or see this region's nucleotide sequence