Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0379 and Dsui_0380 are separated by 270 nucleotides Dsui_0380 and Dsui_0381 are separated by 40 nucleotides
Dsui_0379: Dsui_0379 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 375,998 to 379,549
_0379
Dsui_0380: Dsui_0380 - hypothetical protein, at 379,820 to 380,632
_0380
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1
2
3 at 378.949 kb on - strand, within Dsui_0379 at 379.000 kb on + strand, within Dsui_0379 at 379.068 kb on + strand, within Dsui_0379 at 379.126 kb on - strand at 379.180 kb on + strand, within Dsui_0379 at 379.191 kb on + strand, within Dsui_0379 at 379.191 kb on + strand, within Dsui_0379 at 379.233 kb on - strand at 379.243 kb on - strand at 379.292 kb on + strand at 379.292 kb on + strand at 379.361 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.565 kb on - strand at 379.690 kb on + strand at 379.704 kb on + strand at 379.773 kb on + strand at 379.884 kb on - strand at 379.893 kb on + strand at 379.942 kb on - strand, within Dsui_0380 at 379.993 kb on - strand at 380.003 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.245 kb on - strand, within Dsui_0380 at 380.389 kb on + strand, within Dsui_0380 at 380.397 kb on - strand, within Dsui_0380 at 380.414 kb on + strand, within Dsui_0380 at 380.494 kb on - strand, within Dsui_0380 at 380.551 kb on + strand at 380.846 kb on - strand at 380.901 kb on + strand, within Dsui_0381 at 380.989 kb on - strand at 380.989 kb on - strand, within Dsui_0381 at 381.208 kb on + strand, within Dsui_0381 at 381.216 kb on - strand, within Dsui_0381 at 381.241 kb on + strand, within Dsui_0381 at 381.296 kb on + strand, within Dsui_0381 at 381.386 kb on - strand, within Dsui_0381 at 381.407 kb on - strand, within Dsui_0381 at 381.425 kb on - strand, within Dsui_0381 at 381.476 kb on + strand, within Dsui_0381 at 381.546 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.564 kb on - strand, within Dsui_0381 at 381.564 kb on - strand at 381.564 kb on - strand, within Dsui_0381
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 378,949 - Dsui_0379 0.83 +0.3 379,000 + Dsui_0379 0.85 +0.8 379,068 + Dsui_0379 0.86 -0.0 379,126 - -0.3 379,180 + Dsui_0379 0.90 -1.0 379,191 + Dsui_0379 0.90 -0.9 379,191 + Dsui_0379 0.90 +0.5 379,233 - -0.8 379,243 - +1.2 379,292 + +1.0 379,292 + -0.4 379,361 + +0.1 379,543 + +1.1 379,543 + +1.4 379,543 + +0.4 379,543 + +0.4 379,543 + -1.0 379,543 + -0.7 379,543 + +0.4 379,543 + +0.3 379,543 + +0.5 379,565 - +0.5 379,690 + -0.3 379,704 + +0.4 379,773 + -0.0 379,884 - +0.6 379,893 + +0.2 379,942 - Dsui_0380 0.15 +0.0 379,993 - -0.3 380,003 + Dsui_0380 0.23 +0.8 380,021 + Dsui_0380 0.25 +0.6 380,021 + Dsui_0380 0.25 +0.0 380,021 + Dsui_0380 0.25 -0.1 380,021 + Dsui_0380 0.25 +0.6 380,021 + Dsui_0380 0.25 -1.4 380,029 - +1.0 380,029 - Dsui_0380 0.26 +0.2 380,029 - -0.0 380,029 - Dsui_0380 0.26 +3.0 380,245 - Dsui_0380 0.52 +1.0 380,389 + Dsui_0380 0.70 +0.4 380,397 - Dsui_0380 0.71 +0.8 380,414 + Dsui_0380 0.73 -1.0 380,494 - Dsui_0380 0.83 -0.2 380,551 + +0.3 380,846 - -0.5 380,901 + Dsui_0381 0.12 +0.0 380,989 - -0.8 380,989 - Dsui_0381 0.17 +1.6 381,208 + Dsui_0381 0.28 +0.5 381,216 - Dsui_0381 0.29 +0.3 381,241 + Dsui_0381 0.30 +0.5 381,296 + Dsui_0381 0.33 +1.3 381,386 - Dsui_0381 0.37 +0.1 381,407 - Dsui_0381 0.39 +0.7 381,425 - Dsui_0381 0.39 +0.7 381,476 + Dsui_0381 0.42 -0.1 381,546 + Dsui_0381 0.46 +0.1 381,556 + Dsui_0381 0.46 -0.3 381,556 + Dsui_0381 0.46 -0.3 381,564 - Dsui_0381 0.47 +0.7 381,564 - +0.4 381,564 - Dsui_0381 0.47 +0.4
Or see this region's nucleotide sequence