Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0329 and Dsui_0330 overlap by 4 nucleotides Dsui_0330 and Dsui_0331 overlap by 4 nucleotides
Dsui_0329: Dsui_0329 - PAS domain S-box, at 336,455 to 339,163
_0329
Dsui_0330: Dsui_0330 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 339,160 to 340,053
_0330
Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588
_0331
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1 at 338.293 kb on - strand, within Dsui_0329 at 338.293 kb on - strand, within Dsui_0329 at 338.378 kb on - strand, within Dsui_0329 at 338.378 kb on - strand, within Dsui_0329 at 338.460 kb on - strand, within Dsui_0329 at 338.474 kb on + strand, within Dsui_0329 at 338.514 kb on - strand, within Dsui_0329 at 338.539 kb on + strand, within Dsui_0329 at 338.596 kb on - strand at 338.616 kb on - strand, within Dsui_0329 at 338.752 kb on + strand, within Dsui_0329 at 338.752 kb on + strand, within Dsui_0329 at 338.765 kb on + strand, within Dsui_0329 at 338.808 kb on - strand, within Dsui_0329 at 338.847 kb on + strand, within Dsui_0329 at 338.945 kb on + strand at 338.963 kb on - strand at 338.963 kb on - strand at 339.020 kb on + strand at 339.021 kb on + strand at 339.079 kb on - strand at 339.156 kb on + strand at 339.172 kb on - strand at 339.240 kb on + strand at 339.251 kb on - strand, within Dsui_0330 at 339.259 kb on - strand, within Dsui_0330 at 339.278 kb on - strand, within Dsui_0330 at 339.354 kb on + strand, within Dsui_0330 at 339.363 kb on + strand, within Dsui_0330 at 339.427 kb on + strand, within Dsui_0330 at 339.450 kb on + strand, within Dsui_0330 at 339.470 kb on - strand, within Dsui_0330 at 339.525 kb on - strand, within Dsui_0330 at 339.528 kb on + strand, within Dsui_0330 at 339.555 kb on - strand, within Dsui_0330 at 339.572 kb on + strand, within Dsui_0330 at 339.578 kb on - strand, within Dsui_0330 at 339.652 kb on + strand, within Dsui_0330 at 339.652 kb on + strand, within Dsui_0330 at 339.657 kb on + strand, within Dsui_0330 at 339.660 kb on - strand, within Dsui_0330 at 339.665 kb on - strand, within Dsui_0330 at 339.683 kb on + strand, within Dsui_0330 at 339.886 kb on - strand, within Dsui_0330 at 339.886 kb on - strand, within Dsui_0330 at 339.888 kb on + strand, within Dsui_0330 at 339.972 kb on - strand at 340.013 kb on - strand at 340.021 kb on + strand at 340.166 kb on - strand at 340.185 kb on - strand at 340.207 kb on + strand, within Dsui_0331 at 340.234 kb on - strand, within Dsui_0331 at 340.254 kb on - strand at 340.287 kb on - strand, within Dsui_0331 at 340.314 kb on + strand, within Dsui_0331 at 340.327 kb on - strand, within Dsui_0331 at 340.395 kb on - strand, within Dsui_0331 at 340.409 kb on + strand, within Dsui_0331 at 340.436 kb on - strand, within Dsui_0331 at 340.436 kb on - strand, within Dsui_0331 at 340.533 kb on - strand, within Dsui_0331 at 340.584 kb on - strand, within Dsui_0331 at 340.605 kb on - strand, within Dsui_0331 at 340.647 kb on + strand, within Dsui_0331 at 340.718 kb on + strand, within Dsui_0331 at 340.915 kb on + strand, within Dsui_0331 at 340.923 kb on - strand, within Dsui_0331 at 340.940 kb on + strand, within Dsui_0331 at 340.958 kb on - strand, within Dsui_0331
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 338,293 - Dsui_0329 0.68 -1.0 338,293 - Dsui_0329 0.68 +0.5 338,378 - Dsui_0329 0.71 -0.3 338,378 - Dsui_0329 0.71 +0.1 338,460 - Dsui_0329 0.74 -0.3 338,474 + Dsui_0329 0.75 +0.5 338,514 - Dsui_0329 0.76 -0.4 338,539 + Dsui_0329 0.77 +0.1 338,596 - +1.0 338,616 - Dsui_0329 0.80 -0.3 338,752 + Dsui_0329 0.85 -0.1 338,752 + Dsui_0329 0.85 +0.2 338,765 + Dsui_0329 0.85 -0.5 338,808 - Dsui_0329 0.87 -0.6 338,847 + Dsui_0329 0.88 +0.8 338,945 + +0.1 338,963 - -0.2 338,963 - +1.4 339,020 + +0.7 339,021 + -0.2 339,079 - -0.2 339,156 + -0.2 339,172 - +0.2 339,240 + +0.4 339,251 - Dsui_0330 0.10 +0.0 339,259 - Dsui_0330 0.11 +0.4 339,278 - Dsui_0330 0.13 +0.2 339,354 + Dsui_0330 0.22 +0.4 339,363 + Dsui_0330 0.23 +0.2 339,427 + Dsui_0330 0.30 +0.2 339,450 + Dsui_0330 0.32 -0.3 339,470 - Dsui_0330 0.35 +1.2 339,525 - Dsui_0330 0.41 +0.8 339,528 + Dsui_0330 0.41 +0.1 339,555 - Dsui_0330 0.44 +0.0 339,572 + Dsui_0330 0.46 -0.2 339,578 - Dsui_0330 0.47 -0.5 339,652 + Dsui_0330 0.55 +0.2 339,652 + Dsui_0330 0.55 +0.1 339,657 + Dsui_0330 0.56 +0.3 339,660 - Dsui_0330 0.56 +0.7 339,665 - Dsui_0330 0.56 +0.7 339,683 + Dsui_0330 0.59 +0.2 339,886 - Dsui_0330 0.81 +0.6 339,886 - Dsui_0330 0.81 +0.1 339,888 + Dsui_0330 0.81 -0.0 339,972 - +0.2 340,013 - +0.4 340,021 + +0.4 340,166 - +0.0 340,185 - +0.6 340,207 + Dsui_0331 0.10 +0.5 340,234 - Dsui_0331 0.12 -1.0 340,254 - +1.6 340,287 - Dsui_0331 0.15 +0.4 340,314 + Dsui_0331 0.17 +0.3 340,327 - Dsui_0331 0.18 +0.3 340,395 - Dsui_0331 0.22 +0.3 340,409 + Dsui_0331 0.23 -0.7 340,436 - Dsui_0331 0.25 -0.1 340,436 - Dsui_0331 0.25 -0.0 340,533 - Dsui_0331 0.31 -0.5 340,584 - Dsui_0331 0.35 -0.1 340,605 - Dsui_0331 0.36 -0.6 340,647 + Dsui_0331 0.39 +0.2 340,718 + Dsui_0331 0.43 -0.4 340,915 + Dsui_0331 0.56 -0.0 340,923 - Dsui_0331 0.57 +0.2 340,940 + Dsui_0331 0.58 +0.6 340,958 - Dsui_0331 0.59 +0.1
Or see this region's nucleotide sequence