Strain Fitness in Dechlorosoma suillum PS around Dsui_0193

Experiment: Anaero. lactate (C), nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0191 and Dsui_0192 are separated by 183 nucleotidesDsui_0192 and Dsui_0193 overlap by 20 nucleotidesDsui_0193 and Dsui_0194 overlap by 29 nucleotides Dsui_0191: Dsui_0191 - hypothetical protein, at 190,613 to 191,242 _0191 Dsui_0192: Dsui_0192 - hypothetical protein, at 191,426 to 191,869 _0192 Dsui_0193: Dsui_0193 - putative phage protein, putative large terminase, at 191,850 to 193,328 _0193 Dsui_0194: Dsui_0194 - phage putative head morphogenesis protein, SPP1 gp7 family, at 193,300 to 196,020 _0194 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -2 -1 0 1at 190.882 kb on - strandat 191.026 kb on - strand, within Dsui_0191at 191.136 kb on - strand, within Dsui_0191at 191.285 kb on - strandat 191.540 kb on + strand, within Dsui_0192at 191.575 kb on - strand, within Dsui_0192at 191.675 kb on + strand, within Dsui_0192at 191.675 kb on + strand, within Dsui_0192at 191.750 kb on - strandat 191.796 kb on + strandat 191.945 kb on + strandat 191.992 kb on - strandat 192.011 kb on + strand, within Dsui_0193at 192.011 kb on + strand, within Dsui_0193at 192.019 kb on - strand, within Dsui_0193at 192.023 kb on + strand, within Dsui_0193at 192.058 kb on + strand, within Dsui_0193at 192.374 kb on + strand, within Dsui_0193at 192.543 kb on + strand, within Dsui_0193at 192.611 kb on + strand, within Dsui_0193at 192.611 kb on + strand, within Dsui_0193at 192.626 kb on + strand, within Dsui_0193at 192.812 kb on + strand, within Dsui_0193at 192.834 kb on - strand, within Dsui_0193at 192.837 kb on + strand, within Dsui_0193at 192.953 kb on + strand, within Dsui_0193at 193.032 kb on - strand, within Dsui_0193at 193.036 kb on + strand, within Dsui_0193at 193.071 kb on + strand, within Dsui_0193at 193.123 kb on - strand, within Dsui_0193at 193.225 kb on - strandat 193.397 kb on - strandat 193.707 kb on + strand, within Dsui_0194at 193.707 kb on + strand, within Dsui_0194at 193.726 kb on + strandat 193.734 kb on - strand, within Dsui_0194at 193.856 kb on + strand, within Dsui_0194at 193.927 kb on - strand, within Dsui_0194at 193.974 kb on - strand, within Dsui_0194at 194.118 kb on + strand, within Dsui_0194at 194.138 kb on + strand, within Dsui_0194at 194.138 kb on - strand, within Dsui_0194at 194.146 kb on - strand, within Dsui_0194at 194.169 kb on - strand, within Dsui_0194at 194.235 kb on - strand, within Dsui_0194

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
remove
190,882 - -0.3
191,026 - Dsui_0191 0.66 +0.4
191,136 - Dsui_0191 0.83 +0.5
191,285 - -0.6
191,540 + Dsui_0192 0.26 -1.1
191,575 - Dsui_0192 0.34 -0.4
191,675 + Dsui_0192 0.56 -1.3
191,675 + Dsui_0192 0.56 -0.6
191,750 - +0.4
191,796 + -0.3
191,945 + -0.5
191,992 - -0.3
192,011 + Dsui_0193 0.11 -0.4
192,011 + Dsui_0193 0.11 +1.2
192,019 - Dsui_0193 0.11 -0.9
192,023 + Dsui_0193 0.12 -0.2
192,058 + Dsui_0193 0.14 -1.8
192,374 + Dsui_0193 0.35 -0.1
192,543 + Dsui_0193 0.47 -0.8
192,611 + Dsui_0193 0.51 -0.2
192,611 + Dsui_0193 0.51 +1.3
192,626 + Dsui_0193 0.52 -0.8
192,812 + Dsui_0193 0.65 -0.3
192,834 - Dsui_0193 0.67 -0.9
192,837 + Dsui_0193 0.67 -2.3
192,953 + Dsui_0193 0.75 -0.7
193,032 - Dsui_0193 0.80 -0.8
193,036 + Dsui_0193 0.80 -0.6
193,071 + Dsui_0193 0.83 -2.1
193,123 - Dsui_0193 0.86 -0.7
193,225 - -0.7
193,397 - +0.2
193,707 + Dsui_0194 0.15 -0.1
193,707 + Dsui_0194 0.15 -0.3
193,726 + +0.4
193,734 - Dsui_0194 0.16 -0.7
193,856 + Dsui_0194 0.20 -0.3
193,927 - Dsui_0194 0.23 -0.6
193,974 - Dsui_0194 0.25 +0.0
194,118 + Dsui_0194 0.30 -1.2
194,138 + Dsui_0194 0.31 -0.1
194,138 - Dsui_0194 0.31 +0.4
194,146 - Dsui_0194 0.31 -1.1
194,169 - Dsui_0194 0.32 +0.2
194,235 - Dsui_0194 0.34 -1.0

Or see this region's nucleotide sequence