Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0189 and Dsui_0190 overlap by 4 nucleotides Dsui_0190 and Dsui_0191 overlap by 23 nucleotides Dsui_0191 and Dsui_0192 are separated by 183 nucleotides Dsui_0192 and Dsui_0193 overlap by 20 nucleotides
Dsui_0189: Dsui_0189 - holliday junction resolvase, at 189,998 to 190,438
_0189
Dsui_0190: Dsui_0190 - hypothetical protein, at 190,435 to 190,635
_0190
Dsui_0191: Dsui_0191 - hypothetical protein, at 190,613 to 191,242
_0191
Dsui_0192: Dsui_0192 - hypothetical protein, at 191,426 to 191,869
_0192
Dsui_0193: Dsui_0193 - putative phage protein, putative large terminase, at 191,850 to 193,328
_0193
Position (kb) 191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 190.432 kb on + strand at 190.546 kb on + strand, within Dsui_0190 at 190.651 kb on + strand at 190.668 kb on + strand at 190.697 kb on + strand, within Dsui_0191 at 190.705 kb on - strand, within Dsui_0191 at 190.792 kb on - strand, within Dsui_0191 at 190.797 kb on - strand, within Dsui_0191 at 190.806 kb on - strand, within Dsui_0191 at 190.882 kb on - strand at 191.026 kb on - strand, within Dsui_0191 at 191.136 kb on - strand, within Dsui_0191 at 191.285 kb on - strand at 191.540 kb on + strand, within Dsui_0192 at 191.575 kb on - strand, within Dsui_0192 at 191.675 kb on + strand, within Dsui_0192 at 191.675 kb on + strand, within Dsui_0192 at 191.750 kb on - strand at 191.796 kb on + strand at 191.945 kb on + strand at 191.992 kb on - strand at 192.011 kb on + strand, within Dsui_0193 at 192.011 kb on + strand, within Dsui_0193 at 192.019 kb on - strand, within Dsui_0193 at 192.023 kb on + strand, within Dsui_0193 at 192.058 kb on + strand, within Dsui_0193 at 192.374 kb on + strand, within Dsui_0193 at 192.543 kb on + strand, within Dsui_0193 at 192.611 kb on + strand, within Dsui_0193 at 192.611 kb on + strand, within Dsui_0193 at 192.626 kb on + strand, within Dsui_0193 at 192.812 kb on + strand, within Dsui_0193 at 192.834 kb on - strand, within Dsui_0193 at 192.837 kb on + strand, within Dsui_0193
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 190,432 + -1.2 190,546 + Dsui_0190 0.55 -2.9 190,651 + +0.5 190,668 + -0.7 190,697 + Dsui_0191 0.13 -1.0 190,705 - Dsui_0191 0.15 +1.0 190,792 - Dsui_0191 0.28 +0.6 190,797 - Dsui_0191 0.29 +0.1 190,806 - Dsui_0191 0.31 -0.7 190,882 - -0.3 191,026 - Dsui_0191 0.66 +0.4 191,136 - Dsui_0191 0.83 +0.5 191,285 - -0.6 191,540 + Dsui_0192 0.26 -1.1 191,575 - Dsui_0192 0.34 -0.4 191,675 + Dsui_0192 0.56 -1.3 191,675 + Dsui_0192 0.56 -0.6 191,750 - +0.4 191,796 + -0.3 191,945 + -0.5 191,992 - -0.3 192,011 + Dsui_0193 0.11 -0.4 192,011 + Dsui_0193 0.11 +1.2 192,019 - Dsui_0193 0.11 -0.9 192,023 + Dsui_0193 0.12 -0.2 192,058 + Dsui_0193 0.14 -1.8 192,374 + Dsui_0193 0.35 -0.1 192,543 + Dsui_0193 0.47 -0.8 192,611 + Dsui_0193 0.51 -0.2 192,611 + Dsui_0193 0.51 +1.3 192,626 + Dsui_0193 0.52 -0.8 192,812 + Dsui_0193 0.65 -0.3 192,834 - Dsui_0193 0.67 -0.9 192,837 + Dsui_0193 0.67 -2.3
Or see this region's nucleotide sequence