Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0182 and Dsui_0183 are separated by 2 nucleotides Dsui_0183 and Dsui_0184 are separated by 187 nucleotides Dsui_0184 and Dsui_0185 are separated by 30 nucleotides Dsui_0185 and Dsui_0186 are separated by 23 nucleotides
Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331
_0182
Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930
_0183
Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351
_0184
Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846
_0185
Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398
_0186
Position (kb) 185
186 Strain fitness (log2 ratio) -2
-1
0
1 at 184.145 kb on + strand, within Dsui_0182 at 184.179 kb on - strand, within Dsui_0182 at 184.341 kb on - strand at 185.099 kb on - strand at 185.108 kb on - strand at 185.161 kb on - strand, within Dsui_0184 at 185.270 kb on - strand, within Dsui_0184 at 185.397 kb on + strand at 185.510 kb on - strand, within Dsui_0185 at 185.554 kb on - strand, within Dsui_0185 at 185.592 kb on - strand, within Dsui_0185 at 185.665 kb on + strand, within Dsui_0185 at 185.776 kb on + strand, within Dsui_0185 at 185.843 kb on - strand at 185.843 kb on - strand at 185.843 kb on - strand at 185.848 kb on - strand at 185.885 kb on - strand at 185.898 kb on - strand at 185.907 kb on + strand at 185.907 kb on + strand at 186.096 kb on - strand at 186.107 kb on + strand at 186.107 kb on + strand at 186.115 kb on - strand at 186.120 kb on - strand at 186.243 kb on + strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 184,145 + Dsui_0182 0.71 +0.5 184,179 - Dsui_0182 0.76 -0.1 184,341 - +0.1 185,099 - -0.9 185,108 - -0.1 185,161 - Dsui_0184 0.18 +1.5 185,270 - Dsui_0184 0.65 +0.1 185,397 + +0.0 185,510 - Dsui_0185 0.28 -0.5 185,554 - Dsui_0185 0.37 -0.4 185,592 - Dsui_0185 0.45 +0.6 185,665 + Dsui_0185 0.61 -0.3 185,776 + Dsui_0185 0.85 +0.1 185,843 - -0.1 185,843 - -0.7 185,843 - -0.5 185,848 - -0.3 185,885 - +0.3 185,898 - +0.7 185,907 + +0.1 185,907 + -1.9 186,096 - +0.4 186,107 + +0.4 186,107 + -0.4 186,115 - -1.3 186,120 - -0.8 186,243 + Dsui_0186 0.15 -1.2 186,325 - Dsui_0186 0.18 +0.6 186,325 - Dsui_0186 0.18 +0.4 186,325 - Dsui_0186 0.18 -0.1
Or see this region's nucleotide sequence