Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0105 and Dsui_0106 are separated by 252 nucleotides Dsui_0106 and Dsui_0107 are separated by 149 nucleotides
Dsui_0105: Dsui_0105 - NAD-dependent aldehyde dehydrogenase, at 103,031 to 104,461
_0105
Dsui_0106: Dsui_0106 - hypothetical protein, at 104,714 to 105,490
_0106
Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716
_0107
Position (kb)
104
105
106 Strain fitness (log2 ratio)
-1
0
1
2 at 103.726 kb on + strand at 103.726 kb on + strand, within Dsui_0105 at 103.734 kb on - strand at 103.734 kb on - strand, within Dsui_0105 at 103.734 kb on - strand, within Dsui_0105 at 103.785 kb on + strand, within Dsui_0105 at 103.829 kb on + strand at 103.830 kb on + strand at 103.926 kb on - strand, within Dsui_0105 at 104.029 kb on - strand at 104.042 kb on - strand, within Dsui_0105 at 104.072 kb on + strand, within Dsui_0105 at 104.073 kb on - strand, within Dsui_0105 at 104.149 kb on - strand, within Dsui_0105 at 104.211 kb on + strand at 104.227 kb on + strand at 104.463 kb on + strand at 104.494 kb on + strand at 104.502 kb on - strand at 104.513 kb on + strand at 104.551 kb on - strand at 104.553 kb on + strand at 104.696 kb on + strand at 104.715 kb on - strand at 104.715 kb on - strand at 104.744 kb on - strand at 104.955 kb on - strand, within Dsui_0106 at 104.965 kb on + strand, within Dsui_0106 at 104.984 kb on + strand at 104.997 kb on - strand, within Dsui_0106 at 105.068 kb on + strand, within Dsui_0106 at 105.076 kb on + strand at 105.113 kb on - strand, within Dsui_0106 at 105.202 kb on + strand, within Dsui_0106 at 105.210 kb on - strand at 105.210 kb on - strand, within Dsui_0106 at 105.275 kb on - strand, within Dsui_0106 at 105.458 kb on - strand at 105.467 kb on + strand at 105.564 kb on - strand at 105.712 kb on + strand at 105.713 kb on - strand at 105.720 kb on - strand at 105.720 kb on - strand at 105.771 kb on - strand at 105.830 kb on + strand, within Dsui_0107 at 105.830 kb on + strand at 105.832 kb on + strand, within Dsui_0107 at 105.832 kb on + strand, within Dsui_0107 at 105.838 kb on - strand at 105.838 kb on - strand at 105.861 kb on + strand, within Dsui_0107 at 105.863 kb on + strand, within Dsui_0107 at 105.889 kb on + strand, within Dsui_0107 at 105.942 kb on + strand, within Dsui_0107 at 105.942 kb on - strand at 105.944 kb on + strand at 105.949 kb on + strand, within Dsui_0107 at 105.949 kb on - strand, within Dsui_0107 at 106.032 kb on - strand, within Dsui_0107 at 106.059 kb on + strand, within Dsui_0107 at 106.073 kb on + strand at 106.096 kb on - strand at 106.126 kb on - strand, within Dsui_0107 at 106.129 kb on + strand, within Dsui_0107 at 106.161 kb on + strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.172 kb on + strand, within Dsui_0107 at 106.274 kb on + strand at 106.294 kb on - strand at 106.294 kb on - strand, within Dsui_0107 at 106.327 kb on - strand at 106.332 kb on - strand at 106.351 kb on + strand at 106.352 kb on + strand, within Dsui_0107 at 106.354 kb on + strand, within Dsui_0107 at 106.357 kb on - strand, within Dsui_0107 at 106.357 kb on - strand at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand at 106.405 kb on - strand, within Dsui_0107 at 106.405 kb on - strand, within Dsui_0107 at 106.410 kb on - strand, within Dsui_0107 at 106.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 103,726 + +2.0 103,726 + Dsui_0105 0.49 -1.0 103,734 - +1.0 103,734 - Dsui_0105 0.49 -1.5 103,734 - Dsui_0105 0.49 -0.6 103,785 + Dsui_0105 0.53 +0.4 103,829 + +2.0 103,830 + +0.4 103,926 - Dsui_0105 0.63 -0.3 104,029 - -0.3 104,042 - Dsui_0105 0.71 +0.6 104,072 + Dsui_0105 0.73 +1.0 104,073 - Dsui_0105 0.73 +0.3 104,149 - Dsui_0105 0.78 -0.5 104,211 + +2.0 104,227 + +0.4 104,463 + +0.0 104,494 + +2.0 104,502 - +0.7 104,513 + +1.0 104,551 - +2.0 104,553 + +2.0 104,696 + +2.0 104,715 - +0.0 104,715 - -1.3 104,744 - +1.0 104,955 - Dsui_0106 0.31 +0.0 104,965 + Dsui_0106 0.32 +1.0 104,984 + +0.0 104,997 - Dsui_0106 0.36 -0.5 105,068 + Dsui_0106 0.46 +1.4 105,076 + +1.0 105,113 - Dsui_0106 0.51 -0.3 105,202 + Dsui_0106 0.63 +0.8 105,210 - +2.0 105,210 - Dsui_0106 0.64 +0.5 105,275 - Dsui_0106 0.72 +1.1 105,458 - -1.2 105,467 + +1.0 105,564 - -0.3 105,712 + -0.3 105,713 - +2.0 105,720 - +0.0 105,720 - +1.0 105,771 - -0.6 105,830 + Dsui_0107 0.18 -0.1 105,830 + -0.3 105,832 + Dsui_0107 0.18 +1.1 105,832 + Dsui_0107 0.18 -0.4 105,838 - +1.0 105,838 - +1.0 105,861 + Dsui_0107 0.21 +0.7 105,863 + Dsui_0107 0.21 -0.9 105,889 + Dsui_0107 0.23 -0.0 105,942 + Dsui_0107 0.28 +0.3 105,942 - +0.2 105,944 + +1.0 105,949 + Dsui_0107 0.29 -0.3 105,949 - Dsui_0107 0.29 +0.3 106,032 - Dsui_0107 0.36 +0.6 106,059 + Dsui_0107 0.39 +1.0 106,073 + +1.3 106,096 - +1.0 106,126 - Dsui_0107 0.45 -0.1 106,129 + Dsui_0107 0.45 -0.4 106,161 + Dsui_0107 0.48 +0.6 106,169 - Dsui_0107 0.49 -0.2 106,169 - Dsui_0107 0.49 +2.0 106,172 + Dsui_0107 0.49 +0.0 106,274 + -0.6 106,294 - +1.0 106,294 - Dsui_0107 0.61 -0.6 106,327 - +0.8 106,332 - +0.2 106,351 + +0.0 106,352 + Dsui_0107 0.66 -0.2 106,354 + Dsui_0107 0.66 -0.1 106,357 - Dsui_0107 0.67 -0.4 106,357 - +0.0 106,397 + Dsui_0107 0.70 -1.6 106,397 + Dsui_0107 0.70 -0.0 106,397 + -1.0 106,405 - Dsui_0107 0.71 -0.9 106,405 - Dsui_0107 0.71 +2.0 106,410 - Dsui_0107 0.71 +1.1 106,452 - +0.4
Or see this region's nucleotide sequence