Strain Fitness in Dechlorosoma suillum PS around Dsui_0023

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0022 and Dsui_0023 are separated by 245 nucleotidesDsui_0023 and Dsui_0024 are separated by 153 nucleotidesDsui_0024 and Dsui_0025 are separated by 250 nucleotides Dsui_0022: Dsui_0022 - hypothetical protein, at 19,403 to 20,341 _0022 Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777 _0023 Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377 _0024 Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710 _0025 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 19.592 kb on - strandat 19.700 kb on + strand, within Dsui_0022at 19.702 kb on - strand, within Dsui_0022at 19.723 kb on + strand, within Dsui_0022at 19.775 kb on - strandat 19.818 kb on + strand, within Dsui_0022at 19.897 kb on + strand, within Dsui_0022at 19.905 kb on - strand, within Dsui_0022at 19.981 kb on + strand, within Dsui_0022at 20.059 kb on - strandat 20.086 kb on - strand, within Dsui_0022at 20.105 kb on - strand, within Dsui_0022at 20.145 kb on - strand, within Dsui_0022at 20.177 kb on - strandat 20.293 kb on - strandat 20.316 kb on + strandat 20.324 kb on - strandat 20.383 kb on + strandat 20.528 kb on + strandat 20.529 kb on - strandat 20.540 kb on + strandat 20.603 kb on + strandat 20.628 kb on + strandat 20.705 kb on - strandat 20.719 kb on + strand, within Dsui_0023at 20.736 kb on + strand, within Dsui_0023at 20.799 kb on + strand, within Dsui_0023at 20.921 kb on + strand, within Dsui_0023at 20.974 kb on + strand, within Dsui_0023at 21.010 kb on - strand, within Dsui_0023at 21.079 kb on + strandat 21.181 kb on - strandat 21.186 kb on - strandat 21.221 kb on + strandat 21.227 kb on + strand, within Dsui_0023at 21.286 kb on - strand, within Dsui_0023at 21.360 kb on + strandat 21.584 kb on - strandat 21.779 kb on - strandat 21.779 kb on - strandat 21.783 kb on + strandat 21.795 kb on - strandat 21.859 kb on - strandat 21.900 kb on + strandat 22.049 kb on - strandat 22.062 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.220 kb on - strand, within Dsui_0024at 22.220 kb on - strandat 22.221 kb on - strandat 22.223 kb on + strand, within Dsui_0024at 22.364 kb on - strandat 22.390 kb on + strandat 22.410 kb on + strandat 22.468 kb on - strandat 22.655 kb on + strandat 22.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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19,592 - +1.0
19,700 + Dsui_0022 0.32 +0.3
19,702 - Dsui_0022 0.32 +0.7
19,723 + Dsui_0022 0.34 +0.1
19,775 - +0.0
19,818 + Dsui_0022 0.44 -0.6
19,897 + Dsui_0022 0.53 +1.3
19,905 - Dsui_0022 0.53 -1.3
19,981 + Dsui_0022 0.62 -0.6
20,059 - +2.4
20,086 - Dsui_0022 0.73 -0.4
20,105 - Dsui_0022 0.75 -0.7
20,145 - Dsui_0022 0.79 +0.0
20,177 - +1.0
20,293 - -0.2
20,316 + -0.7
20,324 - +3.0
20,383 + -0.0
20,528 + -0.4
20,529 - +0.8
20,540 + +0.4
20,603 + +2.0
20,628 + -0.6
20,705 - +1.3
20,719 + Dsui_0023 0.11 -3.1
20,736 + Dsui_0023 0.13 -0.7
20,799 + Dsui_0023 0.18 -0.9
20,921 + Dsui_0023 0.28 +0.7
20,974 + Dsui_0023 0.32 -1.0
21,010 - Dsui_0023 0.36 +0.3
21,079 + +0.8
21,181 - +0.0
21,186 - +2.0
21,221 + -0.8
21,227 + Dsui_0023 0.54 +2.0
21,286 - Dsui_0023 0.59 -1.2
21,360 + +0.4
21,584 - +0.0
21,779 - -1.2
21,779 - +1.4
21,783 + +2.0
21,795 - -1.4
21,859 - +0.4
21,900 + -0.2
22,049 - +1.0
22,062 + Dsui_0024 0.29 +0.2
22,212 + Dsui_0024 0.63 -0.3
22,212 + Dsui_0024 0.63 -0.7
22,212 + Dsui_0024 0.63 -0.9
22,220 - Dsui_0024 0.65 +1.2
22,220 - +1.0
22,221 - +0.0
22,223 + Dsui_0024 0.65 -0.2
22,364 - +1.4
22,390 + +1.0
22,410 + -0.7
22,468 - +0.2
22,655 + +1.0
22,751 + +0.4

Or see this region's nucleotide sequence